Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq111 174 3e-41
seq6 159 6e-37
seq38 158 2e-36
seq143 140 6e-31
seq15 89.7 9e-16
seq3 78.8 2e-12
>seq111
Length=2986454
Score = 174 bits (192), Expect = 3e-41
Identities = 160/201 (80%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 2354184 TAATGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGAC 2354243
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| ||| |||||||||| ||||||||||||| |||| || ||||||||||||||| ||
Sbjct 2354244 ATTGAAAGATCAAAAAGTGACGTCGCTATGAATGCTTTGCCACCACAAGCCAGTTATTCC 2354303
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
||||||||| |||||| |||||| || | ||| | | | ||||| | ||||
Sbjct 2354304 TGTGGTAAC-TTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGCAGGATTGTGAGGC 2354362
Query 272 CACACTTTCATGGTTTGTATT 292
| |||||| ||||| | ||||
Sbjct 2354363 CCCACTTTAATGGTCTTTATT 2354383
>seq6
Length=15580261
Score = 159 bits (176), Expect = 6e-37
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||| | ||||||| || | |||| |||||| ||||||||| |
Sbjct 3780768 TCATCAGTAGGGTAAAACTACCTTGTCTCACAACAGCCTAATCCCAGCACACGTTCCCCA 3780827
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||| |||||||||||| ||||||||| ||| || ||||| ||
Sbjct 3780828 TTAGTGGGTGAAGAATCCAACGCTTGGTGAATTCTGCCCTACAATGGAAGTAAGAGAAGA 3780887
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191
||| ||||||||||||||||| ||| |||| ||| ||||||
Sbjct 3780888 CATTGAAGGATCAAAAAGCAATGTCACTATAAACCCTTGGC 3780928
>seq38
Length=6732988
Score = 158 bits (174), Expect = 2e-36
Identities = 118/138 (86%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| ||
Sbjct 5184951 TCATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACACAGCTGATGTTCCTTA 5184892
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||| ||||||| |||| ||||| |||| ||||||||||||||| |
Sbjct 5184891 TTAGTGGGTGAAAAATCCAATGCTTGTTGAATT---CTTCACAATGATAGGAAGAGCCAA 5184835
Query 151 CATCGAAGGATCAAAAAG 168
|| |||| |||||||||
Sbjct 5184834 CACTGAAGCATCAAAAAG 5184817
Score = 132 bits (146), Expect = 8e-29
Identities = 97/113 (86%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||| |||| | |||||||||| ||| ||||||||||||||||||||||||
Sbjct 1455882 TCATCAGTAGGGCAAAAATGACCTGTCTCACGACACTCTAAACCCAGCTCACGTTCCCTA 1455823
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143
|||||||||||| ||||||| |||| | |||||||||| |||||| |||
Sbjct 1455822 TTAGTGGGTGAAAAATCCAATGCTTGGTGCATTCTGCTTCACGATGATAAGAA 1455770
>seq143
Length=2428215
Score = 140 bits (154), Expect = 6e-31
Identities = 194/265 (73%), Gaps = 10/265 (4%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||||||| ||| |||| ||||| ||||||| | | |||||||||||||||| |||| |
Sbjct 1901164 GTCATCAGGAGGATAAACCTAACGTGTCTCACGGCAGTCTAAACCCAGCTCATGTTCATT 1901105
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT-ATGATAGGAAGAGCC 148
||||||||||||| ||| | || | || ||||| ||| || ||| ||||| | |
Sbjct 1901104 GTTAGTGGGTGAACTGCCCAGCACTCAGTGACTTCTG-TTCTGTGGTGACAGGAAAATCT 1901046
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
|||||| ||||| ||| ||| | ||| ||| |||| ||||| || | || || |
Sbjct 1901045 GACATCCAAGGACTGAAA--TAACTTTGCT---AACACTTGACTGCCTCAGGGCA-TTTT 1900992
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268
| ||||||||||||||||| || |||| || | ||| | || || | ||| | |
Sbjct 1900991 CTCTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGACGGTCAGAAG--ACCTGA 1900934
Query 269 GGCCACACTTTCATGGTTTGTATTC 293
||||| || |||||| |||||||
Sbjct 1900933 GGCCATGCTAGCATGGTCTGTATTC 1900909
>seq15
Length=10145208
Score = 89.7 bits (98), Expect = 9e-16
Identities = 141/201 (70%), Gaps = 7/201 (3%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||| || ||||||| |||||| | ||||||| |||||||| | |||| |
Sbjct 5594210 TCATCAGTAGGGAAACACTAACCAGTCTCACTATGGTCTAATCCCAGCTCCCATTCCTTG 5594151
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||| ||| | |||||| ||| |||||| | | || |
Sbjct 5594150 TTAGTGGGTGAACAATAAAAC---CGGCAAATTCTACTTTACAATGATAAAAGAAACCAA 5594094
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||||||||||| || | | || | ||||| ||||||| || |||
Sbjct 5594093 TGCTAAAGGATCAAAAATCAGCACCCCTTT----GCTTGTTCACCACAAGACAAATATTT 5594038
Query 211 CTGTGGTAACTTTTCTGGCAC 231
| |||| |||||| || |||
Sbjct 5594037 CCATGGTCACTTTTATGACAC 5594017
>seq3
Length=19389198
Score = 78.8 bits (86), Expect = 2e-12
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||||| || |||||| |||||| | |||| ||
Sbjct 11330494 TCATCAGTAGGGTAAAACTAACCTGTCTCATGTTGGACTAAACACAGCTCTCATTCCTTA 11330553
Query 91 TTAGTG 96
|| ||
Sbjct 11330554 CTACTG 11330559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854335125408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |