Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq111 174 3e-41 seq6 159 6e-37 seq38 158 2e-36 seq143 140 6e-31 seq15 89.7 9e-16 seq3 78.8 2e-12 >seq111 Length=2986454 Score = 174 bits (192), Expect = 3e-41 Identities = 160/201 (80%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||||||||||||||||||| |||||||||||| |||||||||||||| ||| Sbjct 2354184 TAATGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGAC 2354243 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||| |||||||||| ||||||||||||| |||| || ||||||||||||||| || Sbjct 2354244 ATTGAAAGATCAAAAAGTGACGTCGCTATGAATGCTTTGCCACCACAAGCCAGTTATTCC 2354303 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||| |||||| |||||| || | ||| | | | ||||| | |||| Sbjct 2354304 TGTGGTAAC-TTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGCAGGATTGTGAGGC 2354362 Query 272 CACACTTTCATGGTTTGTATT 292 | |||||| ||||| | |||| Sbjct 2354363 CCCACTTTAATGGTCTTTATT 2354383 >seq6 Length=15580261 Score = 159 bits (176), Expect = 6e-37 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||| | ||||||| || | |||| |||||| ||||||||| | Sbjct 3780768 TCATCAGTAGGGTAAAACTACCTTGTCTCACAACAGCCTAATCCCAGCACACGTTCCCCA 3780827 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||| |||||||||||| ||||||||| ||| || ||||| || Sbjct 3780828 TTAGTGGGTGAAGAATCCAACGCTTGGTGAATTCTGCCCTACAATGGAAGTAAGAGAAGA 3780887 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 ||| ||||||||||||||||| ||| |||| ||| |||||| Sbjct 3780888 CATTGAAGGATCAAAAAGCAATGTCACTATAAACCCTTGGC 3780928 >seq38 Length=6732988 Score = 158 bits (174), Expect = 2e-36 Identities = 118/138 (86%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| || Sbjct 5184951 TCATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACACAGCTGATGTTCCTTA 5184892 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||| ||||||| |||| ||||| |||| ||||||||||||||| | Sbjct 5184891 TTAGTGGGTGAAAAATCCAATGCTTGTTGAATT---CTTCACAATGATAGGAAGAGCCAA 5184835 Query 151 CATCGAAGGATCAAAAAG 168 || |||| ||||||||| Sbjct 5184834 CACTGAAGCATCAAAAAG 5184817 Score = 132 bits (146), Expect = 8e-29 Identities = 97/113 (86%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| |||| | |||||||||| ||| |||||||||||||||||||||||| Sbjct 1455882 TCATCAGTAGGGCAAAAATGACCTGTCTCACGACACTCTAAACCCAGCTCACGTTCCCTA 1455823 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||||||||| ||||||| |||| | |||||||||| |||||| ||| Sbjct 1455822 TTAGTGGGTGAAAAATCCAATGCTTGGTGCATTCTGCTTCACGATGATAAGAA 1455770 >seq143 Length=2428215 Score = 140 bits (154), Expect = 6e-31 Identities = 194/265 (73%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||| ||| |||| ||||| ||||||| | | |||||||||||||||| |||| | Sbjct 1901164 GTCATCAGGAGGATAAACCTAACGTGTCTCACGGCAGTCTAAACCCAGCTCATGTTCATT 1901105 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT-ATGATAGGAAGAGCC 148 ||||||||||||| ||| | || | || ||||| ||| || ||| ||||| | | Sbjct 1901104 GTTAGTGGGTGAACTGCCCAGCACTCAGTGACTTCTG-TTCTGTGGTGACAGGAAAATCT 1901046 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 |||||| ||||| ||| ||| | ||| ||| |||| ||||| || | || || | Sbjct 1901045 GACATCCAAGGACTGAAA--TAACTTTGCT---AACACTTGACTGCCTCAGGGCA-TTTT 1900992 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 | ||||||||||||||||| || |||| || | ||| | || || | ||| | | Sbjct 1900991 CTCTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGACGGTCAGAAG--ACCTGA 1900934 Query 269 GGCCACACTTTCATGGTTTGTATTC 293 ||||| || |||||| ||||||| Sbjct 1900933 GGCCATGCTAGCATGGTCTGTATTC 1900909 >seq15 Length=10145208 Score = 89.7 bits (98), Expect = 9e-16 Identities = 141/201 (70%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| || ||||||| |||||| | ||||||| |||||||| | |||| | Sbjct 5594210 TCATCAGTAGGGAAACACTAACCAGTCTCACTATGGTCTAATCCCAGCTCCCATTCCTTG 5594151 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||| ||| | |||||| ||| |||||| | | || | Sbjct 5594150 TTAGTGGGTGAACAATAAAAC---CGGCAAATTCTACTTTACAATGATAAAAGAAACCAA 5594094 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||| || | | || | ||||| ||||||| || ||| Sbjct 5594093 TGCTAAAGGATCAAAAATCAGCACCCCTTT----GCTTGTTCACCACAAGACAAATATTT 5594038 Query 211 CTGTGGTAACTTTTCTGGCAC 231 | |||| |||||| || ||| Sbjct 5594037 CCATGGTCACTTTTATGACAC 5594017 >seq3 Length=19389198 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||||| || |||||| |||||| | |||| || Sbjct 11330494 TCATCAGTAGGGTAAAACTAACCTGTCTCATGTTGGACTAAACACAGCTCTCATTCCTTA 11330553 Query 91 TTAGTG 96 || || Sbjct 11330554 CTACTG 11330559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854335125408