Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 seq313 87.8 1e-12 seq37 84.2 2e-11 >seq11 Length=12384036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 4519378 GAGAACCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 4519437 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || |||||||||||||||| ||||||||| Sbjct 4519438 AAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 4519475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||||| | || || ||||||||||| |||||||||||||||||||| ||| Sbjct 4520256 CAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 4520315 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | || || || ||||| || |||| || || || ||| ||| Sbjct 4520316 ATACATTCTGAAATGTATAGCCTTCTGATTGACACATACGTCA 4520358 >seq313 Length=537090 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | || || ||||| || | Sbjct 217470 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTTT 217411 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| |||||| || ||||||| Sbjct 217410 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGATGCCAAGGCTCCAGGT 217352 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 217351 AGATGGCAAA 217342 >seq37 Length=6782005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 ||| ||| ||| || ||||||||||| | | || || || |||||||| ||||| ||| Sbjct 2519827 TGGCACGCTTTAGC-CAGGAGGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAG 2519769 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||| ||| ||||| || |||||||| |||||||| | || || || || ||||||| Sbjct 2519768 ATTCTCATTGAGAACGTTCACTCGGAAATGTACAGCTTGCTTATAGACACTTACATCA 2519711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397531209181520