Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq11 91.5 1e-13
seq313 87.8 1e-12
seq37 84.2 2e-11
>seq11
Length=12384036
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101
||||| || || || ||||| | ||||||||| |||| | || || |||| ||||||
Sbjct 4519378 GAGAACCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 4519437
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| ||||| || |||||||||||||||| |||||||||
Sbjct 4519438 AAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 4519475
Score = 82.4 bits (90), Expect = 6e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|| || || ||||| | || || ||||||||||| |||||||||||||||||||| |||
Sbjct 4520256 CAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 4520315
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
| || || || ||||| || |||| || || || ||| |||
Sbjct 4520316 ATACATTCTGAAATGTATAGCCTTCTGATTGACACATACGTCA 4520358
>seq313
Length=537090
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||| || || | || || ||||| || |
Sbjct 217470 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTTT 217411
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| |||||| || |||||||
Sbjct 217410 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGATGCCAAGGCTCCAGGT 217352
Query 66459 AGATGGCGAA 66468
||||||| ||
Sbjct 217351 AGATGGCAAA 217342
>seq37
Length=6782005
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314
||| ||| ||| || ||||||||||| | | || || || |||||||| ||||| |||
Sbjct 2519827 TGGCACGCTTTAGC-CAGGAGGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAG 2519769
Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
||| ||| ||||| || |||||||| |||||||| | || || || || |||||||
Sbjct 2519768 ATTCTCATTGAGAACGTTCACTCGGAAATGTACAGCTTGCTTATAGACACTTACATCA 2519711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397531209181520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |