Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq57259 338 9e-91 seq26706 143 4e-32 seq19560 91.5 2e-16 >seq57259 Length=218 Score = 338 bits (374), Expect = 9e-91 Identities = 208/218 (95%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 216 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 159 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 158 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 99 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 98 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCG 39 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||||||||||||||||||||||||| Sbjct 38 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 1 >seq26706 Length=23907 Score = 143 bits (158), Expect = 4e-32 Identities = 170/223 (76%), Gaps = 13/223 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||| | || ||||||||||||| ||||| | | ||||| |||||| | Sbjct 5067 GTACAAACGGCAGGGGCTTAATCAACGCGAGCTT-ATGACCCACACTTACGGGGAATT-C 5010 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 5009 CTCGTTCACGGGGAAGAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAACG 4954 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGC 174 ||||||| |||| |||| ||| | || | ||| ||| |||||||||||| | Sbjct 4953 GGTTACCCGTGCCTGCCGGCGGAGGGTAGGCACAAGCTGAG-ACAGTCAGTGTAGCGCAC 4895 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || ||||| | ||||||||||||||||||||||||||||||| Sbjct 4894 ATGTGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4852 >seq19560 Length=34830 Score = 91.5 bits (100), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 19 TAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAA 78 || |||| |||||||| ||||| | | || ||| |||||| |||| || | | || || Sbjct 25062 TAATCAATGCGAGCTT-ATGACCCACACTGACTGGGAATT-CCTCATTCACGGGGAAGAA 25005 Query 79 TTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCA 137 ||||||| |||||||||| || ||||| | ||||| | ||||| || Sbjct 25004 TTGCAATCCCAGATCCCCATCATGAATGGGGTTCAATGGGTTACCTGCACCTGCTGGTGG 24945 Query 138 AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197 ||| | || | ||| ||||||||| |||| || ||||| | ||||| ||||| Sbjct 24944 AGGGTAGGCACAAGCTGAGCCAGTCAGTGTAGTGCGCATGTGGCCCCGGACATCCAAGGG 24885 Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||||||||||||||| ||||| || ||||| Sbjct 24884 CACCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 24850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751489161230