Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq26706 168 1e-39 seq57259 113 7e-23 seq19560 102 1e-19 seq51442 77.0 5e-12 >seq26706 Length=23907 Score = 168 bits (186), Expect = 1e-39 Identities = 165/210 (79%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | || ||||| | |||||||||||||||||||||||||||||| || Sbjct 4909 GTCAGTGTAGCGCACATGTGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 4851 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC----CAT 130 | | | || |||||| | |||| | |||||||||||||| | | || || || Sbjct 4850 CCATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACTGCTCAG 4792 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | | |||||| | | ||||| |||||||||||||||||||||||||| Sbjct 4791 GGGTCACGTAACGAGTTAGCATGCCAGAGTCTCATTCGTTATCGGAATTAACCAGACAAA 4732 Query 191 TCACTCCACCAACTAAGAACGGCCATGCAC 220 | ||||||||||||||||||||||||||| Sbjct 4731 TTGCTCCACCAACTAAGAACGGCCATGCAC 4702 >seq57259 Length=218 Score = 113 bits (124), Expect = 7e-23 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 TACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 13 Query 61 ACCTGTTATTGC 72 |||||||||||| Sbjct 12 ACCTGTTATTGC 1 >seq19560 Length=34830 Score = 102 bits (112), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||| || ||||| | ||||| ||||||| |||||||||||||||| || Sbjct 24922 GTCAGTGTAGTGCGCATGTGGCCCCGGACATCCAAGGGCACCACAGACCTGTTATTG-CT 24864 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA----- 129 ||| | || ||||| | |||| | ||||||||||||| | || |||| Sbjct 24863 CAATC-TCGGGTGGCTCAATGCCACTTATCCCTCTAAGAAGTTGGATGCCGACCACTCGG 24805 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 |||| | | ||| |||||| | | ||||||||| ||||| ||||||| |||| || Sbjct 24804 GAGTC-ACGTAACTACTTAGCATGCCAGAGTCTCGTTCATTATCAGAATTAATCAGATAA 24746 >seq51442 Length=24262 Score = 77.0 bits (84), Expect = 5e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||| ||||||| |||| |||| | ||||||||||||||||| |||||||||| Sbjct 6746 CCAGCTAAGAATGGCCATGAACCATCACCGACAGAATCAAGAAAGAGCTCTCAATCTGTC 6805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796258728282