Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq36839 316 3e-84 seq21109 306 6e-81 seq36099 288 2e-75 seq36116 194 3e-47 seq44554 165 1e-38 seq39458 141 2e-31 seq44528 102 1e-19 seq43593 93.3 7e-17 seq23811 93.3 7e-17 seq36093 91.5 3e-16 seq64500 73.4 7e-11 >seq36839 Length=55180 Score = 316 bits (350), Expect = 3e-84 Identities = 228/263 (87%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||| Sbjct 33700 TCATCAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAAGCCCAGCTCGCATTCCCTA 33759 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 33760 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 33819 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | Sbjct 33820 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATGC 33879 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 33880 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGG 33939 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 33940 CCCCGCTTTCACGGTCTGTATTC 33962 >seq21109 Length=113394 Score = 306 bits (338), Expect = 6e-81 Identities = 196/214 (92%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 68246 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTA 68187 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| |||||||||||||| || Sbjct 68186 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 68127 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 68126 CATCGAAGGATCAAAAAGCGACGTTGCTATGAACGCTTGGCCGCCACTAGCCAGTTATCC 68067 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||| || ||| ||| | ||| Sbjct 68066 CTGTGGTAACTTTTCTGACATCTCCAGCTTAAAA 68033 >seq36099 Length=52152 Score = 288 bits (318), Expect = 2e-75 Identities = 221/262 (84%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || || | ||||||||||||||||||||| || | ||||||||||||||||| ||||| | Sbjct 149 CAGCACTGGGGTAAAACTAACCTGTCTCACGATGATCTAAACCCAGCTCACGATCCCTGT 208 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||| |||||||||||| || |||||||||||||| Sbjct 209 TAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAGTGGTAGGAAGAGCCGAC 268 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| Sbjct 269 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACACTTGGCCACCACAAGCCACTTATCCC 328 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||| |||||| || ||||| | | | | ||||||| |||| Sbjct 329 TGTGGTAACTTTTCTGACACCTCCTGCTTCAAACCCCAAAAGCCAGGAGGATCGTGAGGC 388 Query 272 CACACTTTCATGGTTTGTATTC 293 | | |||||| ||| ||||||| Sbjct 389 CCCGCTTTCACGGTCTGTATTC 410 >seq36116 Length=108936 Score = 194 bits (214), Expect = 3e-47 Identities = 119/127 (94%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 74222 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 74281 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 74282 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 74341 Query 151 CATCGAA 157 ||| ||| Sbjct 74342 CATTGAA 74348 >seq44554 Length=64715 Score = 165 bits (182), Expect = 1e-38 Identities = 107/116 (92%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 41401 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 41342 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||||||||||||||||||||||| |||||||||||| |||| ||| |||| Sbjct 41341 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGA-AGGGAGAG 41287 >seq39458 Length=13334 Score = 141 bits (156), Expect = 2e-31 Identities = 81/83 (98%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 6609 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTA 6550 Query 91 TTAGTGGGTGAACAATCCAACGC 113 ||||||||||||||||||||||| Sbjct 6549 TTAGTGGGTGAACAATCCAACGC 6527 >seq44528 Length=96378 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 35286 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 35228 >seq43593 Length=17758 Score = 93.3 bits (102), Expect = 7e-17 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||| ||||| ||| | |||||| ||||| ||||||||| Sbjct 17363 ATCAGTAGGGTAAAACTAACCTGTCACATGATGGT-TTAACCCAACTCACATTCCCTATT 17305 Query 93 AGTGGGTGAACAATCC 108 ||| || |||||||| Sbjct 17304 AGTCAGTCAACAATCC 17289 >seq23811 Length=95544 Score = 93.3 bits (102), Expect = 7e-17 Identities = 150/214 (70%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| || ||| | |||||| |||||||| | ||||||| ||| |||| ||| | Sbjct 40795 TCATTAGGAGGTTGAAACTATTTTGTCTCATAGCAGTCTAAATCCACCTCATGTTTATTG 40736 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || | ||| ||||| ||| ||| |||| || | ||| ||||| || | | Sbjct 40735 TTAATGACTAAACTGACCAACACTTGGTGAACTCTGTTTTGTGGTGACAGGAAAAGACAA 40676 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||| || | ||| | |||| | ||||| |||||||| | ||| || Sbjct 40675 CATCAGTGGATTGAA--GTAACTTTGCTA---ATGCTTGACTGCCACAGGGTGGTTTTCT 40621 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||| || |||| || | ||| Sbjct 40620 CTGTGGTAACTTTTCTGACATCTCTTGCTTAAAA 40587 >seq36093 Length=27556 Score = 91.5 bits (100), Expect = 3e-16 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||| Sbjct 26208 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACGGTCT-AACGCAGCTCACGTTTGCTA 26150 Query 91 TTAGTGGGTGAA 102 ||| ||||||| Sbjct 26149 TTAACGGGTGAA 26138 >seq64500 Length=508 Score = 73.4 bits (80), Expect = 7e-11 Identities = 53/60 (88%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | |||| ||||||||||||||||||||||||||||||||| Sbjct 449 TACTAGGTTGAATTACTATCGCGGCG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853800877632