Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5135 293 8e-77 seq14018 242 1e-61 seq3641 199 1e-48 seq38189 170 6e-40 seq3469 168 2e-39 seq26504 138 4e-30 seq34736 80.6 9e-13 seq5561 80.6 9e-13 >seq5135 Length=786 Score = 293 bits (324), Expect = 8e-77 Identities = 188/204 (92%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||| || | | |||||||||||||||||| Sbjct 734 CTCCCACTTATTCTACACCTCTCATGTCTCTTCCCAGCGCCAGACTAGAGTCAAGCTCAA 675 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 674 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCACTGG 615 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 614 ATAGTAGGTAGGGACAGTGGGAATCTCCTTCATCCATTCATGCGCGTCACTAATTAGATG 555 Query 417 ACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||| | |||||| Sbjct 554 ACGAGGCATTTGGC-AATTTAAGA 532 >seq14018 Length=47712 Score = 242 bits (268), Expect = 1e-61 Identities = 140/144 (97%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 23084 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGG 23143 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 23144 TAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGATGAGGCA 23203 Query 425 TTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||| Sbjct 23204 TTTGGCTACCTTAAGAGAGTCATA 23227 >seq3641 Length=3009 Score = 199 bits (220), Expect = 1e-48 Identities = 134/150 (89%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 |||||||||||||||||| || | ||||| ||||||||| ||||||||||||||||||| Sbjct 669 AGAGTCAAGCTCAACAGGATCGACCTTCCCTGCTGATTCCACCAAGCCCGTTCCCTTGGC 728 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 ||||||||| || ||| |||| |||||||| ||||||||| || ||||||||||||||| Sbjct 729 TGTGGTTTCACTGGATGGTAGGCAGGGACAGCGGGAATCTCATTCATCCATTCATGCGCG 788 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||| ||||||| |||||| Sbjct 789 TCACTAATTAGATGATGAGGCATCTGGCTA 818 >seq38189 Length=768 Score = 170 bits (188), Expect = 6e-40 Identities = 103/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 387 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTC 328 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||| |||||||||||| | ||||||||||||||| |||||||||||||| Sbjct 327 GTTCATCCATTCATGCACATCACTAATTAGATGATGAGGCATTTGGCTA 279 Score = 100 bits (110), Expect = 9e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 ||||| || ||||||||| |||| |||| | ||||||||||||||||||| | ||| Sbjct 670 TGCTCCACGGGAGATTTCCACCCTCCCTGAGCTCACCTTAGGACACCTGCGTTACGCTTT 611 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| ||||||||| ||||||||||||||| | |||| Sbjct 610 GACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 568 >seq3469 Length=895 Score = 168 bits (186), Expect = 2e-39 Identities = 136/160 (85%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 241 CACTTATTCTACACCTCTCAAGTCATTTC-ACAAAGT--CGGACTAGAGTCAAGCTCAAC 297 ||||||| || ||||||| | ||| || | ||||| | |||||||||| ||||||| Sbjct 688 CACTTAT-CTGCACCTCTTA---CATCTCTAGAAAGTGCCAAACTAGAGTCATGCTCAAC 633 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| ||||||| | ||||||| |||||||||||||||||||| || || Sbjct 632 AGGGTCTTCTTTCCCTGCTGATTACACCAAGCCTGTTCCCTTGGCTGTGGTTTCACTGGA 573 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||| |||||||||||||||||| ||| || ||||||| Sbjct 572 TAGTAGGTAGGGACAGTGGGAATCTTGTTCATACATTCAT 533 >seq26504 Length=2241 Score = 138 bits (152), Expect = 4e-30 Identities = 84/89 (94%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 || ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1861 CAAAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCCCTTTGACATTCAGAG 1802 Query 505 CACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| ||||||||| Sbjct 1801 CACTGGGCAGAAATCACATCGCGTCAACA 1773 >seq34736 Length=26777 Score = 80.6 bits (88), Expect = 9e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| | |||||||| || || | |||| | || | ||| |||||| || || Sbjct 17968 CTTTTCCTCCATGAGAGATTTCCGTCCTGCCTGAGCTCGCCATGGGAGACCTGCCTTGTG 18027 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| | ||| |||||||||||| ||||||||||||||| |||| Sbjct 18028 GTTTGTTGGCTGTACCGCCCCAGCCAGACTCCCCACCTGACACTGTC 18074 >seq5561 Length=113910 Score = 80.6 bits (88), Expect = 9e-13 Identities = 68/81 (84%), Gaps = 7/81 (9%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||||| |||||| |||| |||||||| ||||||||| |||||| Sbjct 92169 GAATAGAGTCAAGCTCAACATGGTCTT---TCCCTGCTGATTCTGCCAAGCCCATTCCCT 92225 Query 339 TGGCTGTGG---TTTCGCTAG 356 ||||| ||| |||| |||| Sbjct 92226 TGGCT-TGGACCTTTCACTAG 92245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634053365056