Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq22336 89.7 4e-13
seq7389 89.7 4e-13
seq23382 86.0 5e-12
>seq22336
Length=52721
Score = 89.7 bits (98), Expect = 4e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| | | || || ||||||||||| ||||| ||||
Sbjct 45958 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 45899
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||| ||||| || ||||| ||||||||||| | ||||| || || || ||||
Sbjct 45898 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTATATCA 45842
>seq7389
Length=11090
Score = 89.7 bits (98), Expect = 4e-13
Identities = 104/137 (76%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||| ||||| |||| || || | ||||| ||||| || |
Sbjct 3151 CATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 3210
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| |||||| || |||||||
Sbjct 3211 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGT 3269
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 3270 AGATGGCAAA--AGCCC 3284
>seq23382
Length=2546
Score = 86.0 bits (94), Expect = 5e-12
Identities = 128/179 (72%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 65689 TCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748
||| | |||||||||||||| |||||||| || | || || ||||||||||||| ||
Sbjct 514 TCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATGGTCTCAAA 455
Query 65749 AATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAA 65807
||| | | | | ||| | | |||||| |||||| | || | |||||||| |
Sbjct 454 AATTTGCTGGTTCAAGCGC-TGGGCCTCAGGGCTCTCAAAGGGGTATCTCATCAGGATGA 396
Query 65808 AAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866
||| || ||||| || || || ||||| || |||||||| || || ||||| |||
Sbjct 395 AAGCATCTGCCAGGCCCTGCACCCCAATGCCAATGGGACGGTGGCGTCTGTTGGAGCGT 337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397228233666080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |