Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq62471 86.0 3e-11 seq39868 84.2 9e-11 >seq62471 Length=361 Score = 86.0 bits (94), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 351147 GGTTGATGCCGATGGTGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACC 351206 |||||| || || |||| | | || || |||| |||||||| |||| |||||| Sbjct 58 GGTTGAGGCGGAAGGTGGACCAGGGCAGGATGCGG---ACGCGGTGGCCCATCATGGACA 114 Query 351207 CGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCT 351266 ||||| |||||||||||||| ||| ||||| |||||| || || | || ||| |||| Sbjct 115 TCTTGTGCAGCGTGGGCTGGCGGTTGAAGATGACGATGTCCCCGTCACACATGTGTCTCT 174 Query 351267 CCACCT 351272 |||||| Sbjct 175 CCACCT 180 >seq39868 Length=428 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 349085 TCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAG 349144 ||||| || | ||| | ||||||||| ||||||||||||| ||| || || |||||||| Sbjct 352 TCCTTCAGCCGGGGGACGCCCAGGGTGACGTTCTTGGCCGAGACCCCCGCGTAGTGGAAG 293 Query 349145 GTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACC 349204 || | |||||||| ||| ||| || || || | | |||| | || || || ||| Sbjct 292 GTGTTGAGGGTCATCTGGGTGGCCGGTTCTCCCAGGGACTGAGCTGCCAGCGCCCCCACC 233 Query 349205 ATCTCGCCGGG 349215 ||||| || || Sbjct 232 ATCTCCCCAGG 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2082820507671356