Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq36598 179 1e-42 seq11629 98.7 3e-18 seq405 95.1 4e-17 seq15952 86.0 2e-14 seq2389 86.0 2e-14 seq3382 80.6 9e-13 seq29574 75.2 4e-11 >seq36598 Length=61165 Score = 179 bits (198), Expect = 1e-42 Identities = 154/190 (81%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||||||||| ||| |||||| | | ||||||||||| |||||||| || Sbjct 3521 CTTATTCTACACCTCTCACGTCTCTTCACATCGCCAGACTAGAGTCACACTCAACAGAGT 3580 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||| ||| |||| ||| | || || ||||||| ||||||||||| || | ||||| Sbjct 3581 CTTCTTCCCCTGCTGGATCCACTAAACCTGTTCCCTCAGCTGTGGTTTCACTGGGTAGTA 3640 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 | |||| ||||||| |||||| || |||||||||||| | |||||||||| || | | Sbjct 3641 GTTAGGAACAGTGGAAATCTCATTCATCCATTCATGCACTTCACTAATTAAAT---AATG 3697 Query 423 CATTTGGCTA 432 |||||||||| Sbjct 3698 CATTTGGCTA 3707 >seq11629 Length=26701 Score = 98.7 bits (108), Expect = 3e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||||| ||| || |||| |||| | ||||||||||||||||||| | Sbjct 26178 CTTCTGCTCCGCAGGAGGTTTTCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 26119 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| | ||||||| ||||||||||||||| Sbjct 26118 CTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTG 26080 >seq405 Length=27597 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 16842 CTTCTGCTCCGCGGGAGGTTTCCGTCATCCCTGAGCTCACCTTAGGACACCTGCGTTACG 16901 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| | ||||||| ||||||||||||||| | |||| Sbjct 16902 CTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 16948 >seq15952 Length=142087 Score = 86.0 bits (94), Expect = 2e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 68501 TCATGCGCGTCACTAATTAGATGACGAGGTATTTGGCTACCTTAAGAGAG 68452 >seq2389 Length=23989 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||| |||| || ||| |||| | |||||||||||||| |||| Sbjct 12918 CTTCTGTTCCACTAGAGGTTTCCGTCGTCCCTGAGCTCACCTTAGGACACCTGTGTTACA 12977 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||||||| || |||||| ||||||||||| ||| || |||| Sbjct 12978 CTTTGACAGATGTACCACCCCAGTCAAACTCCCCATCTGCCACTGTC 13024 >seq3382 Length=247771 Score = 80.6 bits (88), Expect = 9e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 || |||| || |||| ||| | ||||||||||||||||||| | ||| |||| | | Sbjct 792 AGGTTTCCGTCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTACGCTTTGACAGGCGAAC 733 Query 82 CGCCCCAGCCAAACTCCCCACCTGACA 108 |||||||| ||||||||||||||| || Sbjct 732 CGCCCCAGTCAAACTCCCCACCTGCCA 706 >seq29574 Length=14357 Score = 75.2 bits (82), Expect = 4e-11 Identities = 81/106 (76%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 1 AGGGATCTTTTGC-TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTG 59 || || ||||||| ||| || ||| ||| | || | ||| | |||||||||||||| Sbjct 2549 AGTGAGCTTTTGCCTCTGCAAGAGGCTTCCATCCTTCCCGAGCTCGCCTTAGGACACCTG 2608 Query 60 CGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 | ||| | ||| ||| ||| ||||||||| |||||||| |||||| Sbjct 2609 CATTACGCTTTGACATGTGTACCGCCCCAGTCAAACTCCTCACCTG 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634305087744