Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq40850 116 3e-21 seq40451 91.5 1e-13 seq29519 91.5 1e-13 >seq40850 Length=60012 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 50326 GGTATACTCCACTATTTCCGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 50385 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||| | |||||| || ||||||||||| || Sbjct 50386 ATTGCTCTTTCGGTTGCAAGAGTCTTTGTAGACCATGTAGGGTGTGCCGGTCTCTGTCTG 50445 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| || | || ||||| || | ||||||||| Sbjct 50446 CGATTCAATGATAGCATACC--AGAGCTGCTGGGCCTTCACC 50485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| || || || | Sbjct 51696 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGTTCTTCTTT 51755 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||||| |||||||||||||| ||||| || ||||||| Sbjct 51756 CCCAGTG-TTCTTCTTTAAGTCGAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 51814 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 51815 AGATGGCAAA--AGCCC 51829 >seq40451 Length=5959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 850 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 909 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| Sbjct 910 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 964 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61057 TTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCT 61116 ||||| | ||||||||| ||||| | || || |||| |||||||| ||||| || ||| Sbjct 2 TTCGTGATTTTCCCCATCCAGTATCACGACATCTGGCAGATGTACAAGAAGGCCGAGGCT 61 Query 61117 TCCTTCTGGACGGTGGAGGAGGT 61139 ||||||||||||| |||||||| Sbjct 62 TCCTTCTGGACGGCAGAGGAGGT 84 >seq29519 Length=205329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||||||| | | || || ||||||||||| ||||| || ||| ||| ||||| Sbjct 6686 CAGGAGGTGCAAATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAAATTCTCATTGAGAAC 6745 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 6746 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 6788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397302823137920