Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1823 111 3e-22 seq1258 111 3e-22 seq1532 102 1e-19 seq982 87.8 3e-15 seq131 84.2 4e-14 seq689 73.4 7e-11 >seq1823 Length=20862333 Score = 111 bits (122), Expect = 3e-22 Identities = 184/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| || |||| | |||||||| ||||| |||| | Sbjct 19262819 TCATCAGGAGGATAAAACTAACTTGACTCACAGCAGTCTAAACTCAGCTAGTGTTCATTG 19262878 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||| ||| ||||| ||| | |||||| || | | | ||||| || || Sbjct 19262879 TTAATGGGTAAACTGACCAACACTTGGTGCATTCTGTTTTGTGGTCACAGGAAAAGATGA 19262938 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||| | || | ||| | |||| | ||| ||| | || | ||| || Sbjct 19262939 CATCAAAGGGTTGAA--GTAACTTTGCTAATAG---TTGACTGACTCAGGGTGGTTTTCT 19262993 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| || |||| || | ||| | || | | ||| |||| ||| Sbjct 19262994 CTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGAACGTC-AAAAGATCCTGAGG 19263052 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||||||| ||||| ||||||| Sbjct 19263053 CCACACTAGCATGGCCTGTATTC 19263075 >seq1258 Length=1499333 Score = 111 bits (122), Expect = 3e-22 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| Sbjct 1010618 TCATCAATAGGGTAAAACTAACCTGTCTCATGATGGTCT-AACCCAACTCACATTCCCTA 1010560 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||| ||||||||||||| | ||| ||||| Sbjct 1010559 TTAGCAGGTGAACAATCCAGCACTTGGTGAATT 1010527 >seq1532 Length=718502 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 563919 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 563861 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 564065 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 564007 >seq982 Length=4687893 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||| |||| | |||||| ||||||||| |||||||| Sbjct 784749 TCATCAGTAGGGTAAAACTAACCTAACTCACAGCAGTCTAAGCCCAGCTCATGTTCCCTA 784690 Query 91 TTAGTGGG 98 |||||||| Sbjct 784689 TTAGTGGG 784682 >seq131 Length=1926956 Score = 84.2 bits (92), Expect = 4e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| | Sbjct 746796 CATCAGTAAGGTAAAACTAACCTGTCTCACGACGGTCT-AACCCAGCTCATGTTCCCTCT 746738 Query 92 T 92 | Sbjct 746737 T 746737 >seq689 Length=5479 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 4922 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 4863 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| ||| || | | |||| || ||||||||||||| | |||| | | Sbjct 4862 CTTGGGACCTGCTTCAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCAAACACC 4806 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| ||| ||||| Sbjct 4805 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 4751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854308818432