Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq689 372 1e-100 >seq689 Length=5479 Score = 372 bits (412), Expect = 1e-100 Identities = 449/600 (75%), Gaps = 22/600 (4%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||| ||||| ||| | ||||| |||| | ||| | | ||||| ||| ||||||| Sbjct 3253 GACGACGGACGTTAG-CACCCGCCGTCTGTCTCCCG-GATATCACTCATCGGTATTCGGA 3196 Query 63 GTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCGG 121 ||||| | || |||||| | | | |||||||| | | |||||||||||| || Sbjct 3195 GTTTGCATCGGTTTGGTAAGTCGAGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCA- 3137 Query 122 GAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | | || ||| || |||||||| ||||||||||||||||||||||| || Sbjct 3136 -ATGGTGTTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCGAG 3078 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||| Sbjct 3077 TTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAACGACAGTGGGT 3018 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||||||||| | |||| |||||||||| ||||||||||||||| | || Sbjct 3017 TCGGTCCTCCGGTAACTGTTACGTCACTTTCAACCTGCTCATGGATAGATCACTCGGTTT 2958 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | ||| ||| | |||||||||| |||||| |||| |||||||| ||| Sbjct 2957 CGGGTCTATACCCTGCAACT-AGACGCCCTATTAAGACTCGGTTTCCCTACGGCTCCCCT 2899 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 | | ||||||||| || ||| || || |||| | | |||| | ||||||| ||||| Sbjct 2898 ATTC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCC 2841 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| || | || || |||||||| | ||||| ||||| |||||||||| Sbjct 2840 GTCAC--GGAA---------CATGTCCGCTCCGACTGCTTGTATGCACACGGTTTCAGGT 2792 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||||| |||||| |||||||||||||||||| || | ||| Sbjct 2791 TCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTA 2732 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||||||| |||||||||||| ||| || ||||||| ||| |||| || |||||| Sbjct 2731 TCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGAATTTC 2672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817406025728