Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2238 383 5e-104 seq574 237 5e-60 seq1698 206 9e-51 seq1532 102 3e-19 >seq2238 Length=11640938 Score = 383 bits (424), Expect = 5e-104 Identities = 224/232 (97%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 3119920 TCTTCTTTCCCTGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAGAGT 3119861 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3119860 AGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAG 3119801 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3119800 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAA 3119741 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3119740 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 3119689 >seq574 Length=9595628 Score = 237 bits (262), Expect = 5e-60 Identities = 170/196 (87%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||||||||||||| | ||| || | | | | |||||| ||| |||||| Sbjct 2522034 CTTCCACTTATTCTACACCTCTTATGTCTCTTTAGAGTGCCAAACTAGAATCATGCTCAA 2522093 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || | Sbjct 2522094 CAGGGTCTTCTTTCCCTCCTGATTCCACCAAGCCTGTTCCCTTGGCTGTGGTTTCACTGG 2522153 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||| |||||||||||||||| || |||||||||||| | |||||||||||||| Sbjct 2522154 ATAGTAGATAAGGACAGTGGGAATCTCATTCATCCATTCATGCACATCACTAATTAGATG 2522213 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||||||| Sbjct 2522214 ACAAGGCATTTGGCTA 2522229 >seq1698 Length=46991 Score = 206 bits (228), Expect = 9e-51 Identities = 149/172 (87%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| ||||||||||||||| | ||| |||||| | | ||||||||||| |||||| Sbjct 26884 CTCCCATTTATTCTACACCTCTGATGTCTCTTCACAGCGCCAGACTAGAGTCATGCTCAA 26943 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| |||||||| |||||||| |||||||| |||| |||||||||||||| ||| | Sbjct 26944 CAGGGTCGTCTTTCCCTGCTGATTCTGCCAAGCCTGTTCTCTTGGCTGTGGTTTTGCTGG 27003 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||| ||||||||||||||||||| || |||||||||||| | |||||| Sbjct 27004 ATAGTAAGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCACATCACTA 27055 Score = 131 bits (144), Expect = 5e-28 Identities = 95/110 (86%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||||| ||||||| ||||||| |||| |||| | |||||||||||||| ||| Sbjct 26624 GATCTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGTGTT 26683 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| |||| ||| | ||||||| |||||||||||||||||| |||| Sbjct 26684 ATGGTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGACACTGTC 26733 >seq1532 Length=718502 Score = 102 bits (112), Expect = 3e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 563739 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 563680 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| ||||||||| ||||||||||||||| Sbjct 563679 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTG 563641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635025491456