Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq574 217 4e-54 seq576 168 2e-39 seq1621 145 2e-32 seq793 140 1e-30 >seq574 Length=9595628 Score = 217 bits (240), Expect = 4e-54 Identities = 283/387 (73%), Gaps = 31/387 (8%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | ||||| |||||| Sbjct 2364436 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACAACCTCC 2364495 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| |||||||||||||||||||||| |||||||| | Sbjct 2364496 CCGGGTCGGGAGCGGGTAATTTGCGCGCCTGCTGCTTTCCTTGGCT-------------- 2364541 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||| ||||||||| |||||| | |||| |||||| Sbjct 2364542 --AGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCACGGTAGG 2364599 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | | ||||||| |||||||||||| |||| | | |||||| | | ||| | | Sbjct 2364600 CACAGACAGTACCATCAAAAGTTGATAGGACAGACACTCGAATGAGTCGTTGCCACCACG 2364659 Query 243 AGGCCATG----CGATTCGTTAAGTTATTATGAATCACC-AAGGAGCCCCGAAGG---GC 294 || | || ||| ||| | ||||| || ||||| ||| || | ||| | Sbjct 2364660 GGGGCGTGCAATCGACTCG--AGGTTATCTGGAGTCACCAAAGCTGCTGGGCAGGCCCGG 2364717 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTAT 351 ||||| |||| ||| |||||| || | | || || ||||| | | || | ||||| Sbjct 2364718 GTTGG-TTTTGGTCTGATAAATGCATGCGTCCCCGGAGGTCGGCGCTCATTGGTGTGTAT 2364776 Query 352 TAGCTCTAGAATTACCACGGTTATCCA 378 |||||||||||||||||| |||||||| Sbjct 2364777 TAGCTCTAGAATTACCACAGTTATCCA 2364803 >seq576 Length=6892551 Score = 168 bits (186), Expect = 2e-39 Identities = 121/138 (88%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || ||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 3381631 GTGCTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 3381572 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||| ||| ||||||||||| |||||||||| |||||||||||||||||||| | Sbjct 3381571 TCCCCGGGTCAGGAGTGGGTAATTTGTGCGCCTGCTGTCTTCCTTGGATGTGGTAGCCAT 3381512 Query 120 TTCTCAGGCTCCCTCTCC 137 |||||||||||||||||| Sbjct 3381511 TTCTCAGGCTCCCTCTCC 3381494 >seq1621 Length=81210 Score = 145 bits (160), Expect = 2e-32 Identities = 134/167 (80%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAA 398 ||||||||||||||||||||||||||| ||||||| | || ||| | | |||| Sbjct 60026 AGCATGTATTAGCTCTAGAATTACCACAATTATCCAAGGAGCGGGAGAGGAGCGACCAAA 60085 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT- 457 ||| |||| |||||||||||||||||| ||||||||||||| | | ||||| Sbjct 60086 GGAACCATAAATGATTTAATGAGCCATTCACAGTTTCACTGTACTGCCCACACGTACTTA 60145 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| |||||||| ||||||||| |||| ||||| Sbjct 60146 AGACATGCATGGCTTAAGCTTTGAGAGAAGCATATG-CTACAGGCAG 60191 >seq793 Length=13333073 Score = 140 bits (154), Expect = 1e-30 Identities = 83/87 (95%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 299009 TTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 298950 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCC 131 ||||||||||||||||||||||||||| Sbjct 298949 GGATGTGGTAGCCGTTTCTCAGGCTCC 298923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510238810112