Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value SEQ30286 192 1e-46 SEQ10228 129 1e-27 SEQ23856 75.2 2e-11 SEQ23855 75.2 2e-11 >SEQ30286 Length=7939 Score = 192 bits (212), Expect = 1e-46 Identities = 239/325 (74%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | || Sbjct 3277 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGCG 3336 Query 71 -GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 3337 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAAC 3395 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || |||||||| |||| |||| |||||| ||||| ||||| || Sbjct 3396 CGAATAGGGG-----AGCCGAAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGT 3450 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | || Sbjct 3451 ATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 3510 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| || |||||||| || ||||||||| | || | ||||||||||| Sbjct 3511 GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGG 3570 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||||||| |||| |||||| || Sbjct 3571 CCAATCAAACCGGGAGATAGCTGGT 3595 >SEQ10228 Length=1115 Score = 129 bits (142), Expect = 1e-27 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 151 AGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGAT 210 || ||||||||| || || |||||| |||| ||| ||||| ||||||| ||||| Sbjct 1115 AGCGAAAGCGAGTCTGAATAGGGCGTTGAGTATTTGGTCGTAGACCCGAAACCAGGTGAT 1056 Query 211 CTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGT 270 |||||| | ||||||||||| |||||| | |||||||||||||||| |||| Sbjct 1055 CTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGT 996 Query 271 TGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGC 330 |||||||| ||||||| | |||||| || |||| |||||| |||| ||| ||||| Sbjct 995 TGAAAAGTGAGCGGATGAACTGAGGGTAGCGGAGAAATTCCAATCGAACTTGGAGATAGC 936 Query 331 TCGT 334 | || Sbjct 935 TGGT 932 >SEQ23856 Length=1343 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| | |||| ||| | || |||||| ||| ||||| || | | | Sbjct 158 AGGGGAGTGAAAGAGAACTTGAAACCGTGTGCTTACAAGTAGTCAGAGCCC-GTTAATGG 100 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 108 |||| ||||||||||||| | ||||| || ||||||| Sbjct 99 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA 62 >SEQ23855 Length=1343 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| | |||| ||| | || |||||| ||| ||||| || | | | Sbjct 158 AGGGGAGTGAAAGAGAACTTGAAACCGTGTGCTTACAAGTAGTCAGAGCCC-GTTAATGG 100 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 108 |||| ||||||||||||| | ||||| || ||||||| Sbjct 99 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 969620617216