Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
SEQ30286 192 1e-46
SEQ10228 129 1e-27
SEQ23856 75.2 2e-11
SEQ23855 75.2 2e-11
>SEQ30286
Length=7939
Score = 192 bits (212), Expect = 1e-46
Identities = 239/325 (74%), Gaps = 7/325 (2%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | ||
Sbjct 3277 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGCG 3336
Query 71 -GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
||||| |||| ||||||| |||||| | | ||| ||| | || ||| |||||||
Sbjct 3337 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAAC 3395
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | || |||||||| |||| |||| |||||| ||||| ||||| ||
Sbjct 3396 CGAATAGGGG-----AGCCGAAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGT 3450
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
||||| ||||||| |||||||| ||| | ||||||||||| |||||| | ||
Sbjct 3451 ATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 3510
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
||||||||||||| || |||||||| || ||||||||| | || | |||||||||||
Sbjct 3511 GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGG 3570
Query 310 CCAATCAAACTGGGAAATAGCTCGT 334
|||||||||| |||| |||||| ||
Sbjct 3571 CCAATCAAACCGGGAGATAGCTGGT 3595
>SEQ10228
Length=1115
Score = 129 bits (142), Expect = 1e-27
Identities = 139/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 151 AGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGAT 210
|| ||||||||| || || |||||| |||| ||| ||||| ||||||| |||||
Sbjct 1115 AGCGAAAGCGAGTCTGAATAGGGCGTTGAGTATTTGGTCGTAGACCCGAAACCAGGTGAT 1056
Query 211 CTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGT 270
|||||| | ||||||||||| |||||| | |||||||||||||||| ||||
Sbjct 1055 CTACCCTTGGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGT 996
Query 271 TGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGC 330
|||||||| ||||||| | |||||| || |||| |||||| |||| ||| |||||
Sbjct 995 TGAAAAGTGAGCGGATGAACTGAGGGTAGCGGAGAAATTCCAATCGAACTTGGAGATAGC 936
Query 331 TCGT 334
| ||
Sbjct 935 TGGT 932
>SEQ23856
Length=1343
Score = 75.2 bits (82), Expect = 2e-11
Identities = 76/98 (78%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||| ||| | |||| ||| | || |||||| ||| ||||| || | | |
Sbjct 158 AGGGGAGTGAAAGAGAACTTGAAACCGTGTGCTTACAAGTAGTCAGAGCCC-GTTAATGG 100
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 108
|||| ||||||||||||| | ||||| || |||||||
Sbjct 99 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA 62
>SEQ23855
Length=1343
Score = 75.2 bits (82), Expect = 2e-11
Identities = 76/98 (78%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||| ||| | |||| ||| | || |||||| ||| ||||| || | | |
Sbjct 158 AGGGGAGTGAAAGAGAACTTGAAACCGTGTGCTTACAAGTAGTCAGAGCCC-GTTAATGG 100
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 108
|||| ||||||||||||| | ||||| || |||||||
Sbjct 99 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA 62
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 969620617216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |