Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value SEQ46338 196 7e-48 SEQ30286 122 1e-25 >SEQ46338 Length=2196 Score = 196 bits (216), Expect = 7e-48 Identities = 192/248 (77%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || |||||||| ||||| || || ||| Sbjct 1225 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGT-TTAGCAG 1283 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| |||||| ||||| |||| Sbjct 1284 AGACCTGTGTTTTTGATAAACAGTCGCTTGGGCCTATTCACTGCG----------GCTCT 1333 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | ||| ||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 1334 TCTGGGCGTGAACCCTAAAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 1393 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| | || | |||||| |||||| | |||| |||||||||||| Sbjct 1394 TTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGT 1453 Query 241 TTACGGTA 248 || ||||| Sbjct 1454 TTGCGGTA 1461 >SEQ30286 Length=7939 Score = 122 bits (134), Expect = 1e-25 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||||||||||||||| |||||||||| | |||||| ||| ||||| | | | || Sbjct 5176 CCTTCTCCCGAAGTTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCG 5117 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| ||||||||||||||||||||||||||||||| |||| Sbjct 5116 CCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 5075 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| ||| || |||| Sbjct 5873 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTT-TCGTGTTTGCACA 5815 Query 62 GACCTGTGTTTTTAGTAAACAGTCGC 87 | ||||||||||| |||||||| || Sbjct 5814 GTGCTGTGTTTTTAATAAACAGTTGC 5789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692201428044