Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value SEQ30286 385 1e-104 SEQ46338 315 2e-83 >SEQ30286 Length=7939 Score = 385 bits (426), Expect = 1e-104 Identities = 237/253 (94%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 47 CGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct 6021 CGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTAACCGACAA 5962 Query 107 GGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 166 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5961 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 5902 Query 167 AGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACC 226 |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5901 AGAGCTTCGCTTGCGCTGACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACC 5842 Query 227 CTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCC 286 |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 5841 GTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGC 5782 Query 287 TGGTATCTTCGAC 299 ||||||||||||| Sbjct 5781 TGGTATCTTCGAC 5769 Score = 125 bits (138), Expect = 2e-26 Identities = 78/84 (93%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 5176 CCTTCTCCCGAAGTTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCG 5117 Query 403 CCTTGGTATTCTCTACCCAACCAC 426 ||||||||||||||||| ||||| Sbjct 5116 CCTTGGTATTCTCTACCTGACCAC 5093 >SEQ46338 Length=2196 Score = 315 bits (348), Expect = 2e-83 Identities = 318/415 (77%), Gaps = 14/415 (3%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| | | ||||||| ||||||| || ||||||| Sbjct 1032 CGCGGGTAACCTGCATCTTCACAGGTACTATGATTTCACCGAGTCTCTCGTTGAGACAGT 1091 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1092 GCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1151 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||| | Sbjct 1152 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCGTAGCTTCGCAGAA 1211 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||| | | |||||||||| ||||||||||||||||| |||||||| || ||| Sbjct 1212 GCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTT 1271 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || || |||||| |||||||||| |||||||||||| ||||| | || || Sbjct 1272 ACGGTTTAGCAGAGACCTGTGTTTTTGATAAACAGTCGCTTGGGCCTATTCACTGCG--- 1328 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 | ||| | | | | ||||| | || | |||||||||||||||||| Sbjct 1329 -----GCTCTT------CTGGGCGTGAACCCTAAAGAGCACCCCTTCTCCCGAAGTTACG 1377 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 | | | ||||||| |||||||| | |||||| ||| | |||| | |||||| Sbjct 1378 GGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTC 1432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1256679352576