Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value SEQ46338 430 3e-118 SEQ30286 201 2e-49 >SEQ46338 Length=2196 Score = 430 bits (476), Expect = 3e-118 Identities = 321/373 (86%), Gaps = 11/373 (3%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | || |||||||||||||| | ||||||||||||||||| Sbjct 1038 TAACCTGCATCTTCACAGGTACTATGATTTCACCGAGTCTCTCGTTGAGACAGTGCCCAA 1097 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1098 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1157 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct 1158 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCGTAGCTTCGCAGAAGCTAAC 1217 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||||||||||||||||||||||| |||||||||| ||| || | Sbjct 1218 CACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTACGGTT 1277 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC-CT---- 295 ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| || Sbjct 1278 TAGCAGAGACCTGTGTTTTTGATAAACAGTCGCTTGGGCCTATTCACTGCGGCTCTTCTG 1337 Query 296 GTCATAGAC-----AG-GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 | | | || || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1338 GGCGTGAACCCTAAAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCC 1397 Query 350 TTAACAATAGTTC 362 ||||| | ||||| Sbjct 1398 TTAACGAGAGTTC 1410 >SEQ30286 Length=7939 Score = 201 bits (222), Expect = 2e-49 Identities = 185/232 (80%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 44 GTTGAGACAG--TGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG 101 || ||||||| || ||| || ||||||| ||||||| |||||||||||| |||||||| Sbjct 6018 GTGGAGACAGCCTGGCCA--TCATTACGCCATTCGTGCAGGTCGGAACTTAACCGACAAG 5961 Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | Sbjct 5960 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 5901 Query 162 CTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCC 221 |||||| |||| || || | |||||||||| ||||||||||||||||| | Sbjct 5900 GAGCTTCGCTTGCGCTGACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCG 5841 Query 222 TATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 ||||| || ||| || || ||| | |||||||||| |||||||| || Sbjct 5840 TATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGC 5789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1058927779328