Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
SEQ12454 250 4e-64
seq875 113 7e-23
SEQ91329 102 1e-19
seq19 82.4 1e-13
seq95 73.4 6e-11
>SEQ12454
Length=36659
Score = 250 bits (276), Expect = 4e-64
Identities = 207/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 3144 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 3086
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133
||| || | |||||| | |||| | |||||||||||||| | | || ||| | |
Sbjct 3085 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 3027
Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| | | | ||| |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 3026 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 2967
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 2966 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTC 2907
Query 251 AATCTGTC 258
||||||||
Sbjct 2906 AATCTGTC 2899
Score = 250 bits (276), Expect = 4e-64
Identities = 207/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 14663 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 14605
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133
||| || | |||||| | |||| | |||||||||||||| | | || ||| | |
Sbjct 14604 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 14546
Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| | | | ||| |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 14545 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 14486
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 14485 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTC 14426
Query 251 AATCTGTC 258
||||||||
Sbjct 14425 AATCTGTC 14418
Score = 116 bits (128), Expect = 6e-24
Identities = 88/101 (87%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 6781 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 6723
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| | || |||||| | |||| | ||||||||||||||
Sbjct 6722 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 6683
>seq875
Length=1527064
Score = 113 bits (124), Expect = 7e-23
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 593890 CTAGTTAGCATGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 593949
Query 202 ACTAAGAACGGCCATGCACC 221
||||||||||||||||||||
Sbjct 593950 ACTAAGAACGGCCATGCACC 593969
Score = 113 bits (124), Expect = 7e-23
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 594203 CTAGTTAGCATGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 594262
Query 202 ACTAAGAACGGCCATGCACC 221
||||||||||||||||||||
Sbjct 594263 ACTAAGAACGGCCATGCACC 594282
>SEQ91329
Length=110
Score = 102 bits (112), Expect = 1e-19
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 47 CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCACTCCACCA 106
Query 202 ACTA 205
||||
Sbjct 107 ACTA 110
>seq19
Length=2697315
Score = 82.4 bits (90), Expect = 1e-13
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230
|| |||||||| ||| |||||||||||||||| |||||| || |||||||| | ||||
Sbjct 2043934 ATAGGAATTAAACAGGCAAATCACTCCACCAAACAAGAACAGCTATGCACCAATATCCAT 2043993
Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||| ||| |||| |||||
Sbjct 2043994 GCAATCAAGAAGTAGCCCTCAACCTGTC 2044021
>seq95
Length=9561987
Score = 73.4 bits (80), Expect = 6e-11
Identities = 66/83 (80%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235
|||||||||||| ||| |||| || ||||||| | |||||||||||||||| |||||
Sbjct 7043426 AATTAACCAGACTAATTGCTCCCTCAGCTAAGAATAGGCATGCACCACCACCCACAGAAT 7043367
Query 236 CAAGAAAGAGCTATCAATCTGTC 258
||||| |||| | ||||||
Sbjct 7043366 AGAGAAAAAGCTTGCCCTCTGTC 7043344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794277214668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |