Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value SEQ12454 250 4e-64 seq875 113 7e-23 SEQ91329 102 1e-19 seq19 82.4 1e-13 seq95 73.4 6e-11 >SEQ12454 Length=36659 Score = 250 bits (276), Expect = 4e-64 Identities = 207/248 (83%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 3144 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 3086 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 3085 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 3027 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 3026 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 2967 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 2966 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTC 2907 Query 251 AATCTGTC 258 |||||||| Sbjct 2906 AATCTGTC 2899 Score = 250 bits (276), Expect = 4e-64 Identities = 207/248 (83%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 14663 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 14605 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 14604 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 14546 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 14545 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 14486 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 14485 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTC 14426 Query 251 AATCTGTC 258 |||||||| Sbjct 14425 AATCTGTC 14418 Score = 116 bits (128), Expect = 6e-24 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 6781 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 6723 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 6722 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 6683 >seq875 Length=1527064 Score = 113 bits (124), Expect = 7e-23 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 593890 CTAGTTAGCATGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 593949 Query 202 ACTAAGAACGGCCATGCACC 221 |||||||||||||||||||| Sbjct 593950 ACTAAGAACGGCCATGCACC 593969 Score = 113 bits (124), Expect = 7e-23 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 594203 CTAGTTAGCATGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 594262 Query 202 ACTAAGAACGGCCATGCACC 221 |||||||||||||||||||| Sbjct 594263 ACTAAGAACGGCCATGCACC 594282 >SEQ91329 Length=110 Score = 102 bits (112), Expect = 1e-19 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 47 CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCACTCCACCA 106 Query 202 ACTA 205 |||| Sbjct 107 ACTA 110 >seq19 Length=2697315 Score = 82.4 bits (90), Expect = 1e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 || |||||||| ||| |||||||||||||||| |||||| || |||||||| | |||| Sbjct 2043934 ATAGGAATTAAACAGGCAAATCACTCCACCAAACAAGAACAGCTATGCACCAATATCCAT 2043993 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||| ||||| Sbjct 2043994 GCAATCAAGAAGTAGCCCTCAACCTGTC 2044021 >seq95 Length=9561987 Score = 73.4 bits (80), Expect = 6e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||||||||||| ||| |||| || ||||||| | |||||||||||||||| ||||| Sbjct 7043426 AATTAACCAGACTAATTGCTCCCTCAGCTAAGAATAGGCATGCACCACCACCCACAGAAT 7043367 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 ||||| |||| | |||||| Sbjct 7043366 AGAGAAAAAGCTTGCCCTCTGTC 7043344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794277214668