Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq326823 342 9e-92 seq247 342 9e-92 seq115 342 9e-92 seq3997 333 5e-89 seq77 268 2e-69 seq1043 221 2e-55 seq326827 134 2e-29 seq4204 113 8e-23 seq205818 109 9e-22 seq553 105 1e-20 SEQ46338 91.5 3e-16 >seq326823 Length=23516118 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 14881576 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 14881635 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 14881636 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 14881695 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 14881696 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 14881755 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 14881756 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 14881815 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 14881816 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 14881869 >seq247 Length=7269945 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 6597979 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 6597920 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 6597919 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 6597860 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6597859 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 6597800 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 6597799 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 6597740 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 6597739 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 6597686 >seq115 Length=1320892 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 234369 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 234428 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 234429 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 234488 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 234489 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 234548 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 234549 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 234608 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 234609 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 234662 >seq3997 Length=4358681 Score = 333 bits (368), Expect = 5e-89 Identities = 251/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 2467141 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2467200 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2467201 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2467260 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| | || |||| Sbjct 2467261 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGATGTTGCTA 2467320 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 2467321 TGAATGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2467380 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||||||| ||||||| Sbjct 2467381 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 2467434 Score = 194 bits (214), Expect = 3e-47 Identities = 169/210 (80%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| Sbjct 2467605 TTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGGTAGGA- 2467663 Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||| ||||||| || | || |||||||| ||||||| ||||||||||| Sbjct 2467664 -------CATCGAAGAATCAAAA-GCGATGTTGCTATGAATGCTTGGCCGCCACAAGCCA 2467715 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 |||||||||||||||||||||||| |||||| || | ||| | | | | |||||| Sbjct 2467716 GTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAAGTCAGAAGGAT 2467775 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||| | |||||||||| ||||||| Sbjct 2467776 CGTGAGGCCCCGCTTTCATGGTCTGTATTC 2467805 >seq77 Length=16422433 Score = 268 bits (296), Expect = 2e-69 Identities = 187/213 (88%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 2302422 CATCAATAGGGTAAAACTAACCTGCCTCATGACAATCTAAACCCAGCTCACGTTCCCTGT 2302481 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||| |||||||||||| ||| |||||||||||| ||||||||||||||| || Sbjct 2302482 TAGTGGATGAACAATCCAATGCTGGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAAC 2302541 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||| Sbjct 2302542 ATCAAAGGATCAAAAAGAGACATTGCTATGAACACTTGGCTGCCACAAGCCAGTTATCCC 2302601 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||| |||||||||| ||||||| || | ||| Sbjct 2302602 TGTGGCAACTTTTCTGACACCTCTTGCTTAAAA 2302634 >seq1043 Length=8788178 Score = 221 bits (244), Expect = 2e-55 Identities = 192/237 (81%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTC 68 ||||||| |||| || || ||||||||||| ||||||||||| ||||||||||| | Sbjct 8194894 GAATTACTATTGCAGCAACACATCATCAGTAGGTTAAAACTAACCCATCTCATGACGGCC 8194835 Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 |||||| ||||||||||||||||| ||||||| ||| |||| |||| |||||||||| Sbjct 8194834 TAAACCTCGCTCACGTTCCCTATTAATGGGTGAGCAAGCCAAGGCTTGGTGAATTCTGCT 8194775 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 || |||||||||||||| |||| ||||| |||| ||||| ||||||||||| |||| Sbjct 8194774 TCACAGTGATAGGAAGAGCCAGCATCAAAGGACCAAATAGCAATGTCGCTATGAATGCTT 8194715 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 | |||||| |||||||| || |||||||||||||| ||||| || | |||| Sbjct 8194714 AGTCATCACAAGACAGTTATCTCTTTGGTAACTTTTCTGAAACCTCCTGCTTAAAAT 8194658 Score = 221 bits (244), Expect = 2e-55 Identities = 192/237 (81%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTC 68 ||||||| |||| || || ||||||||||| ||||||||||| ||||||||||| | Sbjct 8196623 GAATTACTATTGCAGCAACACATCATCAGTAGGTTAAAACTAACCCATCTCATGACGGCC 8196564 Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 |||||| ||||||||||||||||| ||||||| ||| |||| |||| |||||||||| Sbjct 8196563 TAAACCTCGCTCACGTTCCCTATTAATGGGTGAGCAAGCCAAGGCTTGGTGAATTCTGCT 8196504 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 || |||||||||||||| |||| ||||| |||| ||||| ||||||||||| |||| Sbjct 8196503 TCACAGTGATAGGAAGAGCCAGCATCAAAGGACCAAATAGCAATGTCGCTATGAATGCTT 8196444 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 | |||||| |||||||| || |||||||||||||| ||||| || | |||| Sbjct 8196443 AGTCATCACAAGACAGTTATCTCTTTGGTAACTTTTCTGAAACCTCCTGCTTAAAAT 8196387 >seq326827 Length=63182071 Score = 134 bits (148), Expect = 2e-29 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||||||| ||||| || |||||| || || | ||| || | Sbjct 36097982 TCATTAGTAGGGTAAAACTAACCCATCTCAAAACAGTCTAAGCCAAGATTGTGTTTCCCA 36097923 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||| ||||| || | ||||||| |||| ||||||||||||| | Sbjct 36097922 CCGTCTGGTGAACAGTCCAAAGCCTGGTGAATTCTCCTTCACGGCGATAGGAAGAGCCAA 36097863 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||| |||| || || || |||| ||||| ||| | |||||||||||| Sbjct 36097862 CATCAGAGGATCAGAAAGAGACATCACTGTGAATACTTGGATGCTATAAGCCAGTTATCA 36097803 Query 211 CTGTGGTAACTTTTCTG 227 ||||| ||||| ||||| Sbjct 36097802 CTGTGATAACTCTTCTG 36097786 >seq4204 Length=355582 Score = 113 bits (124), Expect = 8e-23 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 166216 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 166275 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93 | |||||||||||||||||||||||||||||||| Sbjct 166276 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTA 166309 >seq205818 Length=165 Score = 109 bits (120), Expect = 9e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 TCTAGCCTCAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 106 Query 293 CAC 295 ||| Sbjct 105 CAC 103 >seq553 Length=3592027 Score = 105 bits (116), Expect = 1e-20 Identities = 95/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 787134 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT-ACACCTCC 787076 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | ||| | | | |||||||| ||||| | |||||| || ||||||| Sbjct 787075 TGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACAGTCTGTATTC 787018 >SEQ46338 Length=2196 Score = 91.5 bits (100), Expect = 3e-16 Identities = 126/175 (72%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 477 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 536 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| | | || | | ||| || ||||||||||||| | |||| | Sbjct 537 CTTGGGACCGACTACAGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 593 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | ||||| |||||||| | |||| ||||| Sbjct 594 CCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCGGGGTAGCTTTT 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851607581568