Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value SEQ46338 154 2e-35 SEQ30286 102 9e-20 >SEQ46338 Length=2196 Score = 154 bits (170), Expect = 2e-35 Identities = 139/181 (77%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| |||||||||| | |||||||||| | ||||| ||||||| | Sbjct 1013 CGGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTATGATTTCACCG 1072 Query 83 AG-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || ||| || ||||||||| ||| || ||||||| |||||||||||||| Sbjct 1073 AGTCTCTCG-TTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACC 1131 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1132 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 1191 Query 202 C 202 | Sbjct 1192 C 1192 >SEQ30286 Length=7939 Score = 102 bits (112), Expect = 9e-20 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5996 TACGCCATTCGTGCAGGTCGGAACTTAACCGACAAGGAATTTCGCTACCTTAGGACCGTT 5937 Query 173 A 173 | Sbjct 5936 A 5936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545467484772