Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value SEQ30286 349 1e-93 SEQ10228 226 1e-56 SEQ23857 179 1e-42 SEQ23856 179 1e-42 SEQ23855 179 1e-42 >SEQ30286 Length=7939 Score = 349 bits (386), Expect = 1e-93 Identities = 411/544 (76%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 51 CCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTG 109 |||| ||||| |||||| | | |||||| | | | |||||| | | | ||||| Sbjct 3709 CCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTG 3650 Query 110 CTCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCA 167 ||||||| |||| || ||| |||| | |||| |||||||| ||||||||||||||| Sbjct 3649 CTCTACCCCCGGAGATGAATTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCA 3592 Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||| Sbjct 3591 GCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCA 3532 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||| |||||||||||||| || |||||| ||||||||||||||||| ||| Sbjct 3531 ACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAG 3472 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| | Sbjct 3471 ATCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCC 3413 Query 348 TACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTC 407 | ||||| ||| | | ||||||||| || ||| || || |||| | | |||| | | Sbjct 3412 TTCGGCTCCCCTATTC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATAC 3355 Query 408 AAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||||| |||| ||||| | ||||| || ||||| || | ||||| | || Sbjct 3354 AAAAGGTACGCAGTCACACG---CCTAA---GC----GTGCTCCCACTGCTTGTACGTAC 3305 Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | |||||||||| || ||||||||||| | | ||||| |||||| ||||||||||||||| Sbjct 3304 ACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 3245 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||| || | |||||||||| |||||||||||| ||| || ||||||| ||| |||| Sbjct 3244 ACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 3185 Query 587 ACAC 590 | || Sbjct 3184 AGAC 3181 >SEQ10228 Length=1115 Score = 226 bits (250), Expect = 1e-56 Identities = 230/297 (77%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTT-GTGGGCCCCCTAGACCATCCAGTGCT 111 ||||||||||||||| ||| |||||||| | | ||| ||||| | ||| ||||||| Sbjct 820 GGCATTCGGAGTTTGTCTGAATTCGGTAACCCGAGAGGGGCCCCTCGTCCAAACAGTGCT 879 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 |||||||| || | ||| || ||| |||||| ||||||| |||||||||||| Sbjct 880 CTACCTCCAATAATCATCACTTGAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTA 939 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 || | ||||| |||||| |||| || ||| || ||| |||||| |||| |||||||| | Sbjct 940 TCTCCAAGTTCGATTGGAATTTCTCCGCTACCCTCAGTTCATCCGCTCACTTTTCAACGT 999 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 |||| |||||||||||||| | || ||||| | |||||||||| ||| || ||||||| Sbjct 1000 AAGTCGGTTCGGTCCTCCATTCAGTGTTACCTGAACTTCAACCTGACCAAGGGTAGATCA 1059 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 | | | ||||||||| | ||||| ||||||||||| |||||||||||||| Sbjct 1060 CCTGGTTTCGGGTCTACGACCAAATACTCA-ACGCCCTATTCAGACTCGCTTTCGCT 1115 >SEQ23857 Length=900 Score = 179 bits (198), Expect = 1e-42 Identities = 180/233 (77%), Gaps = 13/233 (6%) Strand=Plus/Minus Query 367 TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||||| || || | || || ||||| || ||||||| ||||||||||||| ||||| Sbjct 695 TTAACCTTGCATCAGATCGTAA-CTCGCCGGTTCATTCTACAAAAGGCACGCCATCACC- 638 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTT 486 | |||| || |||| ||| ||||| ||||| ||||||| || || ||| Sbjct 637 ----CATAAACGG-------GCTCTGACTACTTGTAAGCACACGGTTTCAAGTTCTCTTT 589 Query 487 CACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCAC 546 |||||||| | ||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 588 CACTCCCCTTCCGGGGTACTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCAC 529 Query 547 CAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||| |||| | |||||| |||||||| ||| ||||||| Sbjct 528 TAGAGAGTATTTAGCCTTAGGAGATGGTCCTCCCAGATTCCGACGGAATTTCA 476 Score = 114 bits (126), Expect = 5e-23 Identities = 135/180 (75%), Gaps = 16/180 (9%) Strand=Plus/Minus Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG--GGTTAACCTCGCGACACAA 383 |||||||| |||||||||||||||||||| || || || | ||||||| || || | Sbjct 900 CCCTATTCAGACTCGCTTTCGCTACGGCT-CCACATTCGCTGCTTAACCTTGCATCAGAT 842 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 || || ||||| || ||||||| ||||||||||||| ||||| | |||| || Sbjct 841 CGTAA-CTCGCCGGTTCATTCTACAAAAGGCACGCCATCACC-----CATAAACGG---- 792 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503 |||| ||| ||||| ||||| ||||||| || || ||||||||||| | ||||| Sbjct 791 ---GCTCTGACTACTTGTAAGCACACGGTTTCAAGTTCTCTTTCACTCCCCTTCCGGGGT 735 >SEQ23856 Length=1343 Score = 179 bits (198), Expect = 1e-42 Identities = 180/233 (77%), Gaps = 13/233 (6%) Strand=Plus/Plus Query 367 TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||||| || || | || || ||||| || ||||||| ||||||||||||| ||||| Sbjct 649 TTAACCTTGCATCAGATCGTAA-CTCGCCGGTTCATTCTACAAAAGGCACGCCATCACC- 706 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTT 486 | |||| || |||| ||| ||||| ||||| ||||||| || || ||| Sbjct 707 ----CATAAACGG-------GCTCTGACTACTTGTAAGCACACGGTTTCAAGTTCTCTTT 755 Query 487 CACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCAC 546 |||||||| | ||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 756 CACTCCCCTTCCGGGGTACTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCAC 815 Query 547 CAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||| |||| | |||||| |||||||| ||| ||||||| Sbjct 816 TAGAGAGTATTTAGCCTTAGGAGATGGTCCTCCCAGATTCCGACGGAATTTCA 868 Score = 104 bits (114), Expect = 8e-20 Identities = 133/182 (73%), Gaps = 20/182 (11%) Strand=Plus/Plus Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACA----CGGGTTAACCTCGCGACAC 381 |||||||| |||||||||||||| ||||| ||||| | | ||||||| || || Sbjct 1 CCCTATTCAGACTCGCTTTCGCTGCGGCT---CCACATTTGCTGCTTAACCTTGCATCAG 57 Query 382 AACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCA 441 | || || ||||| || ||||||| ||||||||||||| ||||| | | || || Sbjct 58 ATCGTAA-CTCGCCGGTTCATTCTACAAAAGGCACGCCATCACC-----CATTAACGG-- 109 Query 442 CTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGG 501 |||| ||| ||||| ||||| ||||||| || || ||||||||||| | ||| Sbjct 110 -----GCTCTGACTACTTGTAAGCACACGGTTTCAAGTTCTCTTTCACTCCCCTTCCGGG 164 Query 502 GT 503 || Sbjct 165 GT 166 >SEQ23855 Length=1343 Score = 179 bits (198), Expect = 1e-42 Identities = 180/233 (77%), Gaps = 13/233 (6%) Strand=Plus/Plus Query 367 TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||||| || || | || || ||||| || ||||||| ||||||||||||| ||||| Sbjct 649 TTAACCTTGCATCAGATCGTAA-CTCGCCGGTTCATTCTACAAAAGGCACGCCATCACC- 706 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTT 486 | |||| || |||| ||| ||||| ||||| ||||||| || || ||| Sbjct 707 ----CATAAACGG-------GCTCTGACTACTTGTAAGCACACGGTTTCAAGTTCTCTTT 755 Query 487 CACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCAC 546 |||||||| | ||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 756 CACTCCCCTTCCGGGGTACTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCAC 815 Query 547 CAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||| |||| | |||||| |||||||| ||| ||||||| Sbjct 816 TAGAGAGTATTTAGCCTTAGGAGATGGTCCTCCCAGATTCCGACGGAATTTCA 868 Score = 104 bits (114), Expect = 8e-20 Identities = 133/182 (73%), Gaps = 20/182 (11%) Strand=Plus/Plus Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACA----CGGGTTAACCTCGCGACAC 381 |||||||| |||||||||||||| ||||| ||||| | | ||||||| || || Sbjct 1 CCCTATTCAGACTCGCTTTCGCTGCGGCT---CCACATTTGCTGCTTAACCTTGCATCAG 57 Query 382 AACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCA 441 | || || ||||| || ||||||| ||||||||||||| ||||| | | || || Sbjct 58 ATCGTAA-CTCGCCGGTTCATTCTACAAAAGGCACGCCATCACC-----CATTAACGG-- 109 Query 442 CTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGG 501 |||| ||| ||||| ||||| ||||||| || || ||||||||||| | ||| Sbjct 110 -----GCTCTGACTACTTGTAAGCACACGGTTTCAAGTTCTCTTTCACTCCCCTTCCGGG 164 Query 502 GT 503 || Sbjct 165 GT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1811659574272