Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015
-06-23] 326,828 sequences; 1,595,295,449 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
SEQ30286 370 4e-100
SEQ10228 242 1e-61
>SEQ30286
Length=7939
Score = 370 bits (410), Expect = 4e-100
Identities = 376/483 (78%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| ||| ||||| | || || |||| ||||||||||||| |||||||| ||||
Sbjct 3420 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 3479
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
|| |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 3480 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 3539
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
||| |||||| ||||| | |||||||||||| || ||||| ||| |||||||||||||
Sbjct 3540 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 3599
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239
|||||| |||||||||||| ||||| | | ||| | |||||||||||||||||| |
Sbjct 3600 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCATCTCCGGGGGTAGAGCACTGTTTCG 3659
Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299
|| |||||||||| ||||||||||| || |||||||| ||||| | | | |||
Sbjct 3660 GCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAT 3719
Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| |||||| | ||| ||||||||| |||||| ||||| || || || |||
Sbjct 3720 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 3777
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||| ||| || | | | ||||| | ||||| || || || |||||
Sbjct 3778 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCCCAGACA 3835
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
|| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||
Sbjct 3836 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 3894
Query 478 GAG 480
|||
Sbjct 3895 GAG 3897
>SEQ10228
Length=1115
Score = 242 bits (268), Expect = 1e-61
Identities = 283/378 (75%), Gaps = 3/378 (1%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| ||| |||||| ||| ||| ||||||||||||||| ||||||||||| |
Sbjct 1107 CGAGTCTGAATAGGGCGTTGAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTT 1048
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
|| |||| ||||| | |||||||| |||||| ||||||| ||| | |||||||| |
Sbjct 1047 GGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGT 988
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
|| |||||| ||| |||||| || |||| | || | |||||||| |||||||||||||
Sbjct 987 GAGCGGATGAACTGAGGGTAGCGGAGAAATTCCAATCGAACTTGGAGATAGCTGGTTCTC 928
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGCACTGTTATG 239
||||||| |||||| ||||||||| || | || || |||||||||||||| |
Sbjct 927 TCCGAAATAGCTTTAGGGCTAGCCTCAAGTGATGATTATTGGAGGTAGAGCACTGTTTGG 868
Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299
| ||||| | | || ||||| || |||||||||||||| || | ||||
Sbjct 867 ACGAGGGGCCCCTCTCGGGTTACCGAATTCAGACAAACTCCGAATGCCAATTA-ATTTAA 809
Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359
| |||||| || |||||||| ||||||||||| ||| ||| || | || ||| |
Sbjct 808 CTTGGGAGTCAGAACATGGGTGATAAGGTCCGTGTTCGAAAGGGAAACAGCCCAGACCAC 749
Query 360 CAGCTAAGGCCCCGAAAT 377
||||||||| ||| ||||
Sbjct 748 CAGCTAAGGTCCCAAAAT 731
Score = 104 bits (114), Expect = 8e-20
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 407 TTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACA 466
|||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 133 TTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCAT-CATTTAAAGAGTGCGTAATA 75
Query 467 GCTCACTAGTCGAG 480
||||||||||||||
Sbjct 74 GCTCACTAGTCGAG 61
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1684077914112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |