Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value SEQ30286 370 4e-100 SEQ10228 242 1e-61 >SEQ30286 Length=7939 Score = 370 bits (410), Expect = 4e-100 Identities = 376/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| ||||| | || || |||| ||||||||||||| |||||||| |||| Sbjct 3420 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 3479 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||||||||||||||| Sbjct 3480 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 3539 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| Sbjct 3540 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 3599 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| |||||||||||| ||||| | | ||| | |||||||||||||||||| | Sbjct 3600 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCATCTCCGGGGGTAGAGCACTGTTTCG 3659 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 || |||||||||| ||||||||||| || |||||||| ||||| | | | ||| Sbjct 3660 GCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAT 3719 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | |||||| | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 3720 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 3777 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | | ||||| | ||||| || || || ||||| Sbjct 3778 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCCCAGACA 3835 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||| Sbjct 3836 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 3894 Query 478 GAG 480 ||| Sbjct 3895 GAG 3897 >SEQ10228 Length=1115 Score = 242 bits (268), Expect = 1e-61 Identities = 283/378 (75%), Gaps = 3/378 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| ||| ||| ||||||||||||||| ||||||||||| | Sbjct 1107 CGAGTCTGAATAGGGCGTTGAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTT 1048 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||| | |||||||| |||||| ||||||| ||| | |||||||| | Sbjct 1047 GGTCAGGTTGAAGTTCAGGTAACACTGAATGGAGGACCGAACCGACTTACGTTGAAAAGT 988 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 || |||||| ||| |||||| || |||| | || | |||||||| ||||||||||||| Sbjct 987 GAGCGGATGAACTGAGGGTAGCGGAGAAATTCCAATCGAACTTGGAGATAGCTGGTTCTC 928 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||||| |||||| ||||||||| || | || || |||||||||||||| | Sbjct 927 TCCGAAATAGCTTTAGGGCTAGCCTCAAGTGATGATTATTGGAGGTAGAGCACTGTTTGG 868 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 | ||||| | | || ||||| || |||||||||||||| || | |||| Sbjct 867 ACGAGGGGCCCCTCTCGGGTTACCGAATTCAGACAAACTCCGAATGCCAATTA-ATTTAA 809 Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 | |||||| || |||||||| ||||||||||| ||| ||| || | || ||| | Sbjct 808 CTTGGGAGTCAGAACATGGGTGATAAGGTCCGTGTTCGAAAGGGAAACAGCCCAGACCAC 749 Query 360 CAGCTAAGGCCCCGAAAT 377 ||||||||| ||| |||| Sbjct 748 CAGCTAAGGTCCCAAAAT 731 Score = 104 bits (114), Expect = 8e-20 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 407 TTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACA 466 |||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| | Sbjct 133 TTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCAT-CATTTAAAGAGTGCGTAATA 75 Query 467 GCTCACTAGTCGAG 480 |||||||||||||| Sbjct 74 GCTCACTAGTCGAG 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1684077914112