Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value SEQ46338 428 2e-117 SEQ30286 161 3e-37 >SEQ46338 Length=2196 Score = 428 bits (474), Expect = 2e-117 Identities = 434/564 (77%), Gaps = 12/564 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||||||||||||||||||| ||| |||||||| ||||| || Sbjct 714 TCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCC 773 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| ||||||||||||||| ||||||||||||| |||| ||||| | |||||||||| Sbjct 774 AACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAG 832 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||| || | ||||||| || ||| ||| | || ||||||| | ||| Sbjct 833 TCAAACTGCCCGCCTGACACTGTCTCCCACCACGATAAGTGGTGCGGGTTAGAAAGCCAA 892 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || | || || |||| || ||||| |||||| |||||| || ||| | Sbjct 893 CACAGCTAGGGTAGTATCCCACCAACGCCTCCACGTAAGCTAGCGCTCACGTTTCAATGG 952 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||| ||||||||| |||| | | |||||| ||||| || |||| ||| ||| ||| Sbjct 953 CTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTCCA 1012 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| ||||||| |||| | ||| ||||||| || ||||| ||||||||| Sbjct 1013 CGGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTATGATTTCACCG 1072 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | |||||||||| | |||||||||| ||||||| ||||||||||||||| Sbjct 1073 AGTCTCTCGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCC 1132 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1133 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 1192 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || || || | ||| || | |||||||||||||||||||||| Sbjct 1193 GATTCGTAGCTTCGCAGA----------AGCTAACCACTCCTCTTAACCTTCCAGCACCG 1242 Query 540 GGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||| || ||||| || Sbjct 1243 GGCAGGCGTCAGCCCCTATACATC 1266 >SEQ30286 Length=7939 Score = 161 bits (178), Expect = 3e-37 Identities = 153/197 (78%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 367 GGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 426 ||| |||||||| || || |||||||||||||||||||||||||||| ||||||||| Sbjct 6019 GGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTAACCGACAAGG 5960 Query 427 AATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACC 486 |||||||||||||||||| ||||||||||| ||||||||||| |||||||| || | Sbjct 5959 AATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 5900 Query 487 CGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGC 546 || || | || ||| || | |||||||||| ||||||||||||| Sbjct 5899 AGCTTCGC----------TTGCGCTGACCCCATCAATTAACCTTCCGGCACCGGGCAGGC 5850 Query 547 GTCAGTCCGTATACCTC 563 |||| |||||||| || Sbjct 5849 GTCACACCGTATACGTC 5833 Score = 89.7 bits (98), Expect = 2e-15 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 14 CTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAGG 73 |||||||||||||| ||| ||| || |||| ||| |||||| || |||||| | || Sbjct 6757 CTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGC 6698 Query 74 GAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACT 127 |||||| | || |||||||||| ||| ||| || ||||||||||| ||||| Sbjct 6697 CAACCTTCGTGCTCCTCCGTTACTCTTTAGGA-GGAGACCGCCCCAGTCAAACT 6645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1696836080128