Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq312388 91.5 1e-13 seq95 87.8 1e-12 seq3026 86.0 5e-12 >seq312388 Length=601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | |||||||||||||| |||||||| || | || || |||||||| Sbjct 363 TCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 422 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | |||||| || ||| | || ||||| || Sbjct 423 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCAGGACTTTCGAAAGG-ATACCTCA 480 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || |||||||| || || ||||| || |||||||| || || | Sbjct 481 TCAAGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGGTGGCGTCTGT 540 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 541 TGGAGCGT 548 >seq95 Length=9561987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || ||||||||||| |||||||||||||||||||| ||| | || || || |||||| Sbjct 3108573 GAAGCCCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGTAC 3108632 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 3108633 AGTCTTCTAATTGACACATACAT 3108655 >seq3026 Length=70695 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | ||||| |||||||| |||||||| || | || || |||||||| Sbjct 59689 TCATACGGTCCTTGCTCCTGGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 59630 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | |||||| || ||| | || ||||| || Sbjct 59629 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCAGGACTTTCGAAAGG-ATACCTCA 59572 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || |||||||| || || ||||| || |||||||| || || | Sbjct 59571 TCAAGATGAAAGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGGTGGCGTCTGT 59512 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 59511 TGGAGCGT 59504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395984400681920