Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq99 343 3e-92 seq302 329 6e-88 seq93 288 2e-75 seq137 120 5e-25 seq2 80.6 5e-13 seq29 78.8 2e-12 >seq99 Length=4051934 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 2964113 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2964054 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2964053 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2963994 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2963993 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2963934 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 2963933 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2963874 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 2963873 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 2963819 >seq302 Length=58831 Score = 329 bits (364), Expect = 6e-88 Identities = 250/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 23648 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 23707 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 23708 ACGACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 23767 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 23768 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 23827 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 23828 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 23887 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| || |||| || Sbjct 23888 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACAGTCTGTAGTC 23941 >seq93 Length=4375509 Score = 288 bits (318), Expect = 2e-75 Identities = 241/294 (82%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 325810 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 325869 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||| ||||||||| ||||||| |||||||||||||||||| |||||| | Sbjct 325870 GCGGCGGTCTAATCCCAGCTCATGTTCCCTGTTAGTGGGTGAACAATCCCACGCTTGGTG 325929 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | |||||||||| ||||||| ||||||| ||||||||| |||||||||||| ||| ||| Sbjct 325930 AGTTCTGCTTCGCAATGATAGAAAGAGCCAACATCGAAGAATCAAAAAGCAAAGTCACTA 325989 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| || Sbjct 325990 TGAACGCTTGGCTGCTACAAGCCAATTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 326049 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||| || ||||| | |||||||||| ||||||| Sbjct 326050 TGAAACCCAAAAAGCCAGAAGGGTCACGAGGCCCCGCTTTCATGGTCTGTATTC 326103 >seq137 Length=2255300 Score = 120 bits (132), Expect = 5e-25 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| Sbjct 253006 TCATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCT-AACCCAACTCACATTCCCTA 253064 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||||||||||||||| || | ||| ||||| Sbjct 253065 TTAGTGGGTGAACAATTCAGCACTTGGAGAATT 253097 >seq2 Length=24686930 Score = 80.6 bits (88), Expect = 5e-13 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||| ||||||| ||||||||||||||| ||||| ||||||||||| ||||||| | Sbjct 6923609 CATCAGTAAGGTAAAAATAACCTGTCTCATGATGGTCT-AACCCAGCTCATGTTCCCTCT 6923551 Query 92 T 92 | Sbjct 6923550 T 6923550 >seq29 Length=10606836 Score = 78.8 bits (86), Expect = 2e-12 Identities = 182/267 (68%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCC--AGCTCACGTTCCC 88 || |||| ||| |||||||||| ||||| | | | |||||||||| | || |||| Sbjct 5898976 TCGTCAGGAGGATAAAACTAACTTGTCTTAGGGCAGTCTAAACCCCCAACTTGTGTTCAT 5898917 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 | ||| ||||| | | ||||||||| |||||||| || | ||| ||||| || Sbjct 5898916 TGTTAATGGGTAAGTGA-CCAACGCTTGGTGAATTCTGTTTTGTGGTGACAGGAAAAGTT 5898858 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 || || |||| | || | ||| | |||| | ||| | || || | ||| | Sbjct 5898857 CACGTCAAAGGGTTGAA--GTAACTTTGCTAATAG---TTGACCACCGCAGGGTGGTTTT 5898803 Query 209 CC-CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGA 266 | |||| |||||||||||| || |||| || | ||| | ||| | | | | |||| Sbjct 5898802 TCTCTGTTGTAACTTTTCTGACATCTCTTGCTTAAAA--CCTAGGAAGTCAGAAGATCCT 5898745 Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| ||||| ||||||| Sbjct 5898744 GAGGCCACACTAGCATGGCCTGTATTC 5898718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854390242752