Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquila_20chrysaetos_20canadensis_20[refseq_20GCF_5F000766835.1_20201 4-10-14] 1,142 sequences; 1,192,743,076 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq99 304 4e-80 seq302 293 8e-77 seq260 221 4e-55 seq123 131 5e-28 seq47 86.0 2e-14 seq93 80.6 9e-13 seq78 77.0 1e-11 >seq99 Length=4051934 Score = 304 bits (336), Expect = 4e-80 Identities = 185/196 (94%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 2963508 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 2963449 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 2963448 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2963389 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2963388 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 2963329 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 2963328 ACGAGGCATTTGGCTA 2963313 >seq302 Length=58831 Score = 293 bits (324), Expect = 8e-77 Identities = 349/483 (72%), Gaps = 58/483 (12%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 23975 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 24034 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| || Sbjct 24035 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 24094 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171 | || |||| || | ||| |||||||| | |||| | || Sbjct 24095 GCGCCCGGCGCGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 24154 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222 |||| ||| | ||||| |||||||||| || ||||||||||||| | Sbjct 24155 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCCCCGACGGCCG 24213 Query 223 -----------------TTGCGCCGAAACGGC----------------TCCCACTTATTC 249 | || ||| | || | |||||||||||| Sbjct 24214 GGACGCCGGCGGGCGGGTCGCCCCGCACCGCCAAGCGCGCGCCCGGCCTCCCACTTATTC 24273 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||||| || |||||| | | |||||||||||||||||||| ||||||||| Sbjct 24274 TACACCTCTCATGTGTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACATTGTCTTCTTT 24333 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||||||||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 24334 CCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 24393 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 24394 ACAGTGGGAATCTTGTTCGTCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 24453 Query 430 CTA 432 ||| Sbjct 24454 CTA 24456 Score = 156 bits (172), Expect = 1e-35 Identities = 96/101 (95%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 30814 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 30873 Query 494 GACATTCAGAGCACT-GGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||| ||||||||||||||| || |||||| Sbjct 30874 GACATTCAGAGCACTGGGGCAGAAATCACATCGCATCAACA 30914 >seq260 Length=133905 Score = 221 bits (244), Expect = 4e-55 Identities = 169/200 (85%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA- 295 |||||| |||||||| ||||| | || || || | | |||| |||||| ||| Sbjct 119910 CTCCCATTTATTCTATTCCTCTGATGTTTCTTTGCAGTGCCAGACTGGAGTCATGCTTCT 119851 Query 296 ---ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| | Sbjct 119850 TTCACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCTGTTCTCTTGGCTGTGGTTTTG 119791 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 119790 CTGGATAGTAAGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTA 119731 Query 413 GATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| Sbjct 119730 GATGACGAGGCATTTGGCTA 119711 >seq123 Length=2850928 Score = 131 bits (144), Expect = 5e-28 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2061675 GATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGAT 2061734 Query 416 GACGAGGCATTTGGCTA 432 ||||||||||||||||| Sbjct 2061735 GACGAGGCATTTGGCTA 2061751 >seq47 Length=8633692 Score = 86.0 bits (94), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| | |||||||| || | | ||| ||| ||| |||| |||||||||||||||| Sbjct 1893200 CTTAAAA-AGTCATAGATATTTCTGCCTTTTTCCCATGCTTCACTGAATTTCTTCACTTT 1893142 Query 494 GACATTCAGAGCACTGGGCAGA 515 |||||||||||||||||||||| Sbjct 1893141 GACATTCAGAGCACTGGGCAGA 1893120 >seq93 Length=4375509 Score = 80.6 bits (88), Expect = 9e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| |||| | |||| |||| | ||||||||||||||||||| | Sbjct 326137 CTTCTGCTCTGCGGGAGGTTTCCGACCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 326196 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||| || ||||||||| ||||| |||| | || | |||| Sbjct 326197 CTTTGGCAGGGGTACCGCCCCAGTCAAACCCCCCGCTTGCCGCTGTC 326243 >seq78 Length=5498149 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| | |||| |||| || |||| |||| | |||||||| ||||| ||| Sbjct 3506204 CTTCTCCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCACCTTAGGAGACCTGTCTTACA 3506263 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 |||| | | ||| || ||||||||||||||||||||||| Sbjct 3506264 GTTTGATTGGTGTACCACCCCAGCCAAACTCCCCACCTGA 3506303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635181326016