Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26] 192,790 sequences; 1,204,700,227 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq39979 183 1e-43 seq28223 158 4e-36 seq14854 118 3e-24 seq21627 93.3 1e-16 >seq39979 Length=9972 Score = 183 bits (202), Expect = 1e-43 Identities = 159/196 (81%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||||||||| ||| |||||| | | ||||||||||||||||||||||| Sbjct 5259 ACTTACTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGG 5200 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT--- 358 ||||| | | | ||||||| ||||| || |||||| |||||||| ||| ||||||| Sbjct 5199 CCTTCTCTGCTCACTGATTCAGCCAAACCTGTTCCCCTGGCTGTGATTTTGCTAGATAGT 5140 Query 359 -AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA-CTAATTAGATG 416 |||| ||| |||||| ||||||| ||| ||||||||||| |||| | ||||||||| Sbjct 5139 AAGTACGTAGAGACAGTAGGAATCTTGTTCATCCATTCATGTATGTCACCAAATTAGATG 5080 Query 417 ACGAGGCATTTGGCTA 432 || |||| |||| ||| Sbjct 5079 ACAAGGCTTTTGACTA 5064 >seq28223 Length=37278 Score = 158 bits (174), Expect = 4e-36 Identities = 141/175 (81%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT-CCGCCAAGCCCGTTCCCT 338 |||| |||||||| ||| || ||||| ||||| || ||| || |||||||| ||| || Sbjct 5990 ACTACAGTCAAGCACAATAGAGTCTT---TCCCCACTTATTTCCACCAAGCCCCTTCTCT 5934 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||| ||| || | |||||| || ||||||| | ||||| ||| |||||||| || Sbjct 5933 TGGCTGTGGCTTCACTGGCTAGTAGGTACGGACAGTAGTAATCTTGTTTATCCATTCCTG 5874 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 | | |||||||||||| |||| | ||||||||||||||||||||| || ||| Sbjct 5873 CATCTTGCTAATTAGATGATGAGGTACTTGGCTACCTTAAGAGAGTCACAGATAC 5819 >seq14854 Length=16352 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||| |||||||||||| |||||| | ||| ||| |||||| |||| |||||| Sbjct 10142 TGGCTACCTT--GAGAGTCATAGTGACTCCCACTGTTCACCTGCGCTTCGTTGGATTTCT 10085 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||| |||||| | |||||||||||||||| | ||||||| Sbjct 10084 TCATTTTGACGTTCAGACCGCTGGGCAGAAATCACAGCGTGTCAACA 10038 >seq21627 Length=616 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 94 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 35 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 ||| |||| ||| ||||||||| |||||||||| Sbjct 34 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632047497920