Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ara_20macao_20[genbank_20GCA_5F000400695.1_202013-06-26]
192,790 sequences; 1,204,700,227 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq39979 183 1e-43
seq28223 158 4e-36
seq14854 118 3e-24
seq21627 93.3 1e-16
>seq39979
Length=9972
Score = 183 bits (202), Expect = 1e-43
Identities = 159/196 (81%), Gaps = 5/196 (3%)
Strand=Plus/Minus
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
||||| ||||||||||||| ||| |||||| | | |||||||||||||||||||||||
Sbjct 5259 ACTTACTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGG 5200
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT--- 358
||||| | | | ||||||| ||||| || |||||| |||||||| ||| |||||||
Sbjct 5199 CCTTCTCTGCTCACTGATTCAGCCAAACCTGTTCCCCTGGCTGTGATTTTGCTAGATAGT 5140
Query 359 -AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA-CTAATTAGATG 416
|||| ||| |||||| ||||||| ||| ||||||||||| |||| | |||||||||
Sbjct 5139 AAGTACGTAGAGACAGTAGGAATCTTGTTCATCCATTCATGTATGTCACCAAATTAGATG 5080
Query 417 ACGAGGCATTTGGCTA 432
|| |||| |||| |||
Sbjct 5079 ACAAGGCTTTTGACTA 5064
>seq28223
Length=37278
Score = 158 bits (174), Expect = 4e-36
Identities = 141/175 (81%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT-CCGCCAAGCCCGTTCCCT 338
|||| |||||||| ||| || ||||| ||||| || ||| || |||||||| ||| ||
Sbjct 5990 ACTACAGTCAAGCACAATAGAGTCTT---TCCCCACTTATTTCCACCAAGCCCCTTCTCT 5934
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
||||||||| ||| || | |||||| || ||||||| | ||||| ||| |||||||| ||
Sbjct 5933 TGGCTGTGGCTTCACTGGCTAGTAGGTACGGACAGTAGTAATCTTGTTTATCCATTCCTG 5874
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453
| | |||||||||||| |||| | ||||||||||||||||||||| || |||
Sbjct 5873 CATCTTGCTAATTAGATGATGAGGTACTTGGCTACCTTAAGAGAGTCACAGATAC 5819
>seq14854
Length=16352
Score = 118 bits (130), Expect = 3e-24
Identities = 91/107 (85%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
|||||||||| |||||||||||| |||||| | ||| ||| |||||| |||| ||||||
Sbjct 10142 TGGCTACCTT--GAGAGTCATAGTGACTCCCACTGTTCACCTGCGCTTCGTTGGATTTCT 10085
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||| |||||| |||||| | |||||||||||||||| | |||||||
Sbjct 10084 TCATTTTGACGTTCAGACCGCTGGGCAGAAATCACAGCGTGTCAACA 10038
>seq21627
Length=616
Score = 93.3 bits (102), Expect = 1e-16
Identities = 77/94 (82%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| |
Sbjct 94 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 35
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100
||| |||| ||| ||||||||| ||||||||||
Sbjct 34 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1632047497920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |