Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq45128 185 1e-44 seq40818 143 4e-32 seq5921 73.4 6e-11 >seq45128 Length=378 Score = 185 bits (204), Expect = 1e-44 Identities = 175/220 (80%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| |||| |||| | ||||||||||| |||||||||||||||||| | Sbjct 165 GTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGTGTCACAGACCTGTTATTGC-T 223 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | |||| | | || Sbjct 224 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGAGCGC--TC 280 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||| ||||||||||||| Sbjct 281 G--GGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATTGGAATTAACCAGA 338 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||||| |||||||||||||||||||||||||||||| || Sbjct 339 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACAAC 378 >seq40818 Length=86873 Score = 143 bits (158), Expect = 4e-32 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | |||||||||||||| | |||||||||| |||||||||||||||||||| Sbjct 69760 TTAGCATGCCAGGGTCTCGTTCGTTAGCAGAATTAACCACACAAATCACTCCACCAACTA 69701 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264 |||||||||||| ||||||||| | ||||| |||||||||| ||| |||||| |||| Sbjct 69700 AGAACGGCCATGAACCACCACCTGTGGAATCGAGAAAGAGCTCTCAGTCTGTCAGCCCT 69642 >seq5921 Length=161387 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||||||||||| ||| |||| || ||||||| ||||||||||||||||| ||| Sbjct 149803 AATTAACCAGACTAATTGCTCCGTCAGCTAAGAATAACCATGCACCACCACCCAAGAAAT 149744 Query 236 CAAGAAAGAGCTA 248 ||||||| ||||| Sbjct 149743 CAAGAAAAAGCTA 149731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796387102971