Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq3771 246 5e-63
seq3186 145 1e-32
seq12024 140 6e-31
seq21526 89.7 9e-16
seq18779 82.4 1e-13
seq22544 77.0 6e-12
>seq3771
Length=109385
Score = 246 bits (272), Expect = 5e-63
Identities = 231/293 (79%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || || |||| |||||||||||||||||||||
Sbjct 71344 TACTGAGCAGGATTACTATTGCAACAACACATCTTCAGCAGGGTAAAACTAACCTGTCTC 71403
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||| || |||||| |||||| ||||||||||| |||||| |||| || |||||| |
Sbjct 71404 ACGACAGTTTAAACCTAGCTCAAGTTCCCTATTACTGGGTGGACAAGCCCACGCTTGGTG 71463
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||||||||| ||||||||||| | |||| ||||
Sbjct 71464 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAACGTGACGTTGCTA 71523
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||| ||||||| |||||| ||||||| |||||||||| ||||||| | | | ||
Sbjct 71524 TGAATGCTTGGCCGCCACATACCAGTTACACCTGTGGTAAGTTTTCTGATGCTTATTGCT 71583
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
| ||| | | | | ||||||| ||||| |||||||||||| ||||||
Sbjct 71584 TAAAACTAAAAAAGCCAGAAGGATCATGAGGCCCCACTTTCATGGTCTGTATT 71636
>seq3186
Length=10171
Score = 145 bits (160), Expect = 1e-32
Identities = 192/263 (73%), Gaps = 9/263 (3%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||| |||||||||||||| ||||||||| ||||| ||||||||| |||| |
Sbjct 849 TCATCAGGAGGGTAAAACTAACTTGTCTCATGGTAGTCTACACCCAGCTCGTGTTCATTG 908
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||| ||||||||| ||||||||| |||||||| || | ||| ||||| || |||
Sbjct 909 TTAATGGGTGAACCGACCAACGCTT---GAATTCTGTTTTGTGGTGAGAGGAAAAGACGA 965
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||| ||| | ||| ||| | ||| || |||| |||||||| | ||| ||
Sbjct 966 CATCAAAGCGT--TGAAGTAACTTTGCT---AATACTTGACTGCCACAGGGTGGTTTTCT 1020
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||||| || |||| || | ||| | || | | | | ||| |||
Sbjct 1021 CTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGAAAGTC-ACACAATCCTGAGG 1079
Query 271 CCACACTTTCATGGTTTGTATTC 293
||||||| |||| |||||||
Sbjct 1080 CCACACTAGTATGGCCTGTATTC 1102
>seq12024
Length=1189
Score = 140 bits (154), Expect = 6e-31
Identities = 92/101 (91%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193
||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||
Sbjct 109 ATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCGATGTCGCTATGAACACTTGGCCA 50
Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||||||||||||||||| |||||||||||||| ||||||
Sbjct 49 CCACAAGCCAGTTATCCC--TGGTAACTTTTCTGACACCTC 11
>seq21526
Length=31097
Score = 89.7 bits (98), Expect = 9e-16
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||| |||||||||||||||| ||| || || |||||||||| || ||||||||
Sbjct 13980 TCATCAGTATGGTAAAACTAACCTGTTTCACAACAGTTTAAACCCAGCCCATGTTCCCTA 13921
Query 91 TTAGTGGGTGAA 102
|||||||| |||
Sbjct 13920 TTAGTGGGGGAA 13909
>seq18779
Length=37520
Score = 82.4 bits (90), Expect = 1e-13
Identities = 56/62 (90%), Gaps = 1/62 (2%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||| ||||||||||||||||||| ||| ||||| |||||||||||| ||||||
Sbjct 9108 TCATCAGTAAGGTAAAACTAACCTGTCTCGTGATGGTCT-AACCCAGCTCACATTCCCTC 9050
Query 91 TT 92
||
Sbjct 9049 TT 9048
>seq22544
Length=34084
Score = 77.0 bits (84), Expect = 6e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255
||||||||||||||||||| |||||||||||| |||||| || | ||| | | |
Sbjct 13607 ACAAGCCAGTTATCCCTGTAGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCC 13548
Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
|||||||| ||| | |||||||| ||| ||||||
Sbjct 13547 AGAAGGATCGTGAGGTCCCACTTTCACGGTCTGTATT 13511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853942972896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |