Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3771 246 5e-63 seq3186 145 1e-32 seq12024 140 6e-31 seq21526 89.7 9e-16 seq18779 82.4 1e-13 seq22544 77.0 6e-12 >seq3771 Length=109385 Score = 246 bits (272), Expect = 5e-63 Identities = 231/293 (79%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || || |||| ||||||||||||||||||||| Sbjct 71344 TACTGAGCAGGATTACTATTGCAACAACACATCTTCAGCAGGGTAAAACTAACCTGTCTC 71403 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||| || |||||| |||||| ||||||||||| |||||| |||| || |||||| | Sbjct 71404 ACGACAGTTTAAACCTAGCTCAAGTTCCCTATTACTGGGTGGACAAGCCCACGCTTGGTG 71463 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||| ||||||||||| | |||| |||| Sbjct 71464 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAACGTGACGTTGCTA 71523 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| ||||||| |||||| ||||||| |||||||||| ||||||| | | | || Sbjct 71524 TGAATGCTTGGCCGCCACATACCAGTTACACCTGTGGTAAGTTTTCTGATGCTTATTGCT 71583 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | | | ||||||| ||||| |||||||||||| |||||| Sbjct 71584 TAAAACTAAAAAAGCCAGAAGGATCATGAGGCCCCACTTTCATGGTCTGTATT 71636 >seq3186 Length=10171 Score = 145 bits (160), Expect = 1e-32 Identities = 192/263 (73%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||||||||||||| ||||||||| ||||| ||||||||| |||| | Sbjct 849 TCATCAGGAGGGTAAAACTAACTTGTCTCATGGTAGTCTACACCCAGCTCGTGTTCATTG 908 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||||||| ||||||||| |||||||| || | ||| ||||| || ||| Sbjct 909 TTAATGGGTGAACCGACCAACGCTT---GAATTCTGTTTTGTGGTGAGAGGAAAAGACGA 965 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||| | ||| ||| | ||| || |||| |||||||| | ||| || Sbjct 966 CATCAAAGCGT--TGAAGTAACTTTGCT---AATACTTGACTGCCACAGGGTGGTTTTCT 1020 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| || |||| || | ||| | || | | | | ||| ||| Sbjct 1021 CTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGAAAGTC-ACACAATCCTGAGG 1079 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||||||| |||| ||||||| Sbjct 1080 CCACACTAGTATGGCCTGTATTC 1102 >seq12024 Length=1189 Score = 140 bits (154), Expect = 6e-31 Identities = 92/101 (91%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||| Sbjct 109 ATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCGATGTCGCTATGAACACTTGGCCA 50 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||||| |||||||||||||| |||||| Sbjct 49 CCACAAGCCAGTTATCCC--TGGTAACTTTTCTGACACCTC 11 >seq21526 Length=31097 Score = 89.7 bits (98), Expect = 9e-16 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||||||||| ||| || || |||||||||| || |||||||| Sbjct 13980 TCATCAGTATGGTAAAACTAACCTGTTTCACAACAGTTTAAACCCAGCCCATGTTCCCTA 13921 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 13920 TTAGTGGGGGAA 13909 >seq18779 Length=37520 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| ||||||||||||||||||| ||| ||||| |||||||||||| |||||| Sbjct 9108 TCATCAGTAAGGTAAAACTAACCTGTCTCGTGATGGTCT-AACCCAGCTCACATTCCCTC 9050 Query 91 TT 92 || Sbjct 9049 TT 9048 >seq22544 Length=34084 Score = 77.0 bits (84), Expect = 6e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 ||||||||||||||||||| |||||||||||| |||||| || | ||| | | | Sbjct 13607 ACAAGCCAGTTATCCCTGTAGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCC 13548 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||||| ||| | |||||||| ||| |||||| Sbjct 13547 AGAAGGATCGTGAGGTCCCACTTTCACGGTCTGTATT 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853942972896