Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq33231 251 2e-64 seq16901 246 1e-62 seq2584 192 2e-46 seq38903 140 1e-30 seq25919 105 2e-20 seq22544 102 3e-19 >seq33231 Length=1543 Score = 251 bits (278), Expect = 2e-64 Identities = 343/483 (71%), Gaps = 58/483 (12%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||| || |||| |||| | ||||||||||||||||||||| Sbjct 77 CTTCTGCTCCACGGGAGGCTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTATG 136 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC-----ATCAACCC 121 ||| |||| ||| |||| |||| ||||||||||||||| | |||| | || | Sbjct 137 CTTTGACAGGTGTACCGCTCCAGTCAAACTCCCCACCTGCCGCTGTCCCTGGAGCAGGTC 196 Query 122 G-GATCGGCCCGCG-AAGGACCTTAACGCCAGAA---AATG-----GTCGGTGAAGACCA 171 | | ||| || | ||| ||| | || ||| | | || | || ||| Sbjct 197 GCGCCTGGCACGTGTCAGGTGCTTGGCACCTGAAGCGAGAGCTCCCCTCAGGGATCACC- 255 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222 || ||||| | ||||| |||||||||| || || |||||||||||| Sbjct 256 CCCCCACTTCACCGGGTAAGTGAAAAAACGATCAGAGTGGTGGTATTTCACCGACGGCCA 315 Query 223 -----------------TTGCGCCGAAAC---------------GGC-TCCCACTTATTC 249 | || ||| | | ||| |||||||||||| Sbjct 316 GGACGCCGGCAGGTGGGTCGCCCCGCACCACTGAGCGTGCGCCCGGCTTCCCACTTATTC 375 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||||| ||| |||||| | |||||||||||||||||||| |||||||||| Sbjct 376 TACACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAACAAGGTCTTCTTT 435 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||| |||||||| |||||||| |||||||| |||| |||| ||| |||||||| ||||| Sbjct 436 CCCCACTGATTCCACCAAGCCCATTCCCTTGTCTGTAGTTTTGCTGGATAGTAGGTAGGG 495 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 |||||||||||| ||| |||||||||||| | ||||||||||||||| ||||||||||| Sbjct 496 CCAGTGGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATGATGAGGCATTTGG 555 Query 430 CTA 432 ||| Sbjct 556 CTA 558 >seq16901 Length=836 Score = 246 bits (272), Expect = 1e-62 Identities = 147/154 (95%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 836 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTACCTGCTGATTCCGCCAAGCCCATTCCCT 777 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct 776 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 717 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | |||||||||||||||||||||||||||||||| Sbjct 716 CTCGTCACTAATTAGATGACGAGGCATTTGGCTA 683 >seq2584 Length=35824 Score = 192 bits (212), Expect = 2e-46 Identities = 123/134 (92%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| ||| Sbjct 14517 GGGTCTTCCTTCCCCGCTGGTTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGAT 14576 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 || || |||||||||||||||||| ||| ||| |||| |||||||||||||||||||||| Sbjct 14577 AGCAGGTAGGGACAGTGGGAATCTTGTTCATCTATTCTTGCGCGTCACTAATTAGATGAC 14636 Query 419 GAGGCATTTGGCTA 432 || ||||||||||| Sbjct 14637 GAAGCATTTGGCTA 14650 Score = 84.2 bits (92), Expect = 7e-14 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 12 GCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTA 71 |||| || |||| |||| | || |||| | ||||||||||||||||||| | ||| Sbjct 14189 GCTCCACGGGAGGTTTCCAT---CCCTGAGCTCTCCTTAGGACACCTGCGTTACGCTTTG 14245 Query 72 ACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| | ||||||| ||||||||||||||| | |||| Sbjct 14246 ACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 14287 >seq38903 Length=38766 Score = 140 bits (154), Expect = 1e-30 Identities = 156/211 (74%), Gaps = 18/211 (9%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||| ||||||||||||||| | ||| |||||| | |||||||||| | |||| Sbjct 26275 TCCCATTTATTCTACACCTCTGATGTCTCTTCACAGCACCACACTAGAGTCATGTGCAAC 26216 Query 298 AGGGTCTTCTTTCCCC----------------GCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||| || ||| || |||||| || ||||||| |||| ||||| Sbjct 26215 AGGGTCATCCTTCACCAGGGCCATCCTGTCCTGCTGATCCCCCCAAGCCTGTTCTCTTGG 26156 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG--C 399 |||||||||| || | || || ||||||||| ||||||||| || |||||||||| | Sbjct 26155 CTGTGGTTTCACTGGGTACTAAGTAGGGACAGAGGGAATCTCATTTCTCCATTCATGCAC 26096 Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGC 430 | ||||||||| |||| |||| ||||||| Sbjct 26095 ACATCACTAATTGGATGGTGAGGTATTTGGC 26065 >seq25919 Length=223996 Score = 105 bits (116), Expect = 2e-20 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| | |||| |||| |||||| |||| | |||||||| |||||||||||| Sbjct 203144 CTTCTCCTCCATGGGAGGTTTCCATTCTCCCTGAGCTCGCCTTAGGAGACCTGCGTTATG 203203 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 |||| |||| ||| | ||||||||||||||||||||||||| Sbjct 203204 GTTTGACAGGTGTACTGCCCCAGCCAAACTCCCCACCTGAC 203244 >seq22544 Length=34084 Score = 102 bits (112), Expect = 3e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | |||||||| | |||||||||| Sbjct 13476 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGATATCTGCGTTATG 13417 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| | ||||||| ||||||||||||||| Sbjct 13416 CTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTG 13378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634325315168