Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq33231 251 2e-64
seq16901 246 1e-62
seq2584 192 2e-46
seq38903 140 1e-30
seq25919 105 2e-20
seq22544 102 3e-19
>seq33231
Length=1543
Score = 251 bits (278), Expect = 2e-64
Identities = 343/483 (71%), Gaps = 58/483 (12%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||| || |||| |||| | |||||||||||||||||||||
Sbjct 77 CTTCTGCTCCACGGGAGGCTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTATG 136
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC-----ATCAACCC 121
||| |||| ||| |||| |||| ||||||||||||||| | |||| | || |
Sbjct 137 CTTTGACAGGTGTACCGCTCCAGTCAAACTCCCCACCTGCCGCTGTCCCTGGAGCAGGTC 196
Query 122 G-GATCGGCCCGCG-AAGGACCTTAACGCCAGAA---AATG-----GTCGGTGAAGACCA 171
| | ||| || | ||| ||| | || ||| | | || | || |||
Sbjct 197 GCGCCTGGCACGTGTCAGGTGCTTGGCACCTGAAGCGAGAGCTCCCCTCAGGGATCACC- 255
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222
|| ||||| | ||||| |||||||||| || || ||||||||||||
Sbjct 256 CCCCCACTTCACCGGGTAAGTGAAAAAACGATCAGAGTGGTGGTATTTCACCGACGGCCA 315
Query 223 -----------------TTGCGCCGAAAC---------------GGC-TCCCACTTATTC 249
| || ||| | | ||| ||||||||||||
Sbjct 316 GGACGCCGGCAGGTGGGTCGCCCCGCACCACTGAGCGTGCGCCCGGCTTCCCACTTATTC 375
Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309
||||||||||| ||| |||||| | |||||||||||||||||||| ||||||||||
Sbjct 376 TACACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAACAAGGTCTTCTTT 435
Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369
|||| |||||||| |||||||| |||||||| |||| |||| ||| |||||||| |||||
Sbjct 436 CCCCACTGATTCCACCAAGCCCATTCCCTTGTCTGTAGTTTTGCTGGATAGTAGGTAGGG 495
Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429
|||||||||||| ||| |||||||||||| | ||||||||||||||| |||||||||||
Sbjct 496 CCAGTGGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATGATGAGGCATTTGG 555
Query 430 CTA 432
|||
Sbjct 556 CTA 558
>seq16901
Length=836
Score = 246 bits (272), Expect = 1e-62
Identities = 147/154 (95%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 836 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTACCTGCTGATTCCGCCAAGCCCATTCCCT 777
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
|||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 776 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 717
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
| ||||||||||||||||||||||||||||||||
Sbjct 716 CTCGTCACTAATTAGATGACGAGGCATTTGGCTA 683
>seq2584
Length=35824
Score = 192 bits (212), Expect = 2e-46
Identities = 123/134 (92%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358
|||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||
Sbjct 14517 GGGTCTTCCTTCCCCGCTGGTTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGAT 14576
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
|| || |||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||
Sbjct 14577 AGCAGGTAGGGACAGTGGGAATCTTGTTCATCTATTCTTGCGCGTCACTAATTAGATGAC 14636
Query 419 GAGGCATTTGGCTA 432
|| |||||||||||
Sbjct 14637 GAAGCATTTGGCTA 14650
Score = 84.2 bits (92), Expect = 7e-14
Identities = 80/102 (78%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 12 GCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTA 71
|||| || |||| |||| | || |||| | ||||||||||||||||||| | |||
Sbjct 14189 GCTCCACGGGAGGTTTCCAT---CCCTGAGCTCTCCTTAGGACACCTGCGTTACGCTTTG 14245
Query 72 ACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| ||| | ||||||| ||||||||||||||| | ||||
Sbjct 14246 ACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 14287
>seq38903
Length=38766
Score = 140 bits (154), Expect = 1e-30
Identities = 156/211 (74%), Gaps = 18/211 (9%)
Strand=Plus/Minus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
||||| ||||||||||||||| | ||| |||||| | |||||||||| | ||||
Sbjct 26275 TCCCATTTATTCTACACCTCTGATGTCTCTTCACAGCACCACACTAGAGTCATGTGCAAC 26216
Query 298 AGGGTCTTCTTTCCCC----------------GCTGATTCCGCCAAGCCCGTTCCCTTGG 341
|||||| || ||| || |||||| || ||||||| |||| |||||
Sbjct 26215 AGGGTCATCCTTCACCAGGGCCATCCTGTCCTGCTGATCCCCCCAAGCCTGTTCTCTTGG 26156
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG--C 399
|||||||||| || | || || ||||||||| ||||||||| || |||||||||| |
Sbjct 26155 CTGTGGTTTCACTGGGTACTAAGTAGGGACAGAGGGAATCTCATTTCTCCATTCATGCAC 26096
Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGC 430
| ||||||||| |||| |||| |||||||
Sbjct 26095 ACATCACTAATTGGATGGTGAGGTATTTGGC 26065
>seq25919
Length=223996
Score = 105 bits (116), Expect = 2e-20
Identities = 84/101 (83%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| | ||| | |||| |||| |||||| |||| | |||||||| ||||||||||||
Sbjct 203144 CTTCTCCTCCATGGGAGGTTTCCATTCTCCCTGAGCTCGCCTTAGGAGACCTGCGTTATG 203203
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107
|||| |||| ||| | |||||||||||||||||||||||||
Sbjct 203204 GTTTGACAGGTGTACTGCCCCAGCCAAACTCCCCACCTGAC 203244
>seq22544
Length=34084
Score = 102 bits (112), Expect = 3e-19
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | |||||||| | ||||||||||
Sbjct 13476 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGATATCTGCGTTATG 13417
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105
||| |||| ||| | ||||||| |||||||||||||||
Sbjct 13416 CTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTG 13378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634325315168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |