Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11767 203 1e-49 seq36537 116 1e-23 >seq11767 Length=83449 Score = 203 bits (224), Expect = 1e-49 Identities = 141/159 (89%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 37243 CCTCCCCCGG-CGGGATGGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 37185 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||| Sbjct 37184 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATG 37125 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||| | ||| ||||||||||||||||||||| Sbjct 37124 GTAGGCACAGACAGTACAATCGAAAGTTGATAGGGCAGA 37086 >seq36537 Length=3820 Score = 116 bits (128), Expect = 1e-23 Identities = 125/164 (76%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAAT 399 |||||||||||||||||||||||||| | | |||| || ||| | ||| Sbjct 480 GCATGTATTAGCTCTAGAATTACCACAGCTTTCCAAAGAGCGGGAGAGGAGGGACAAAAG 421 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| || ||||||||| | ||||||| | |||||||||||| | |||||| Sbjct 420 GAACCATTACTGATTTACTAAGCCATTTGGAGTTTCACTGTACCACCCATGTTTACTTAA 361 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 360 ACATGCATGGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509592071936