Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11560 120 2e-22 seq25901 105 5e-18 seq1807 86.0 5e-12 >seq11560 Length=34702 Score = 120 bits (132), Expect = 2e-22 Identities = 126/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || || ||||| ||||| ||||| ||||| ||||| || Sbjct 9788 GGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 9729 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 9728 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTG 9669 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| || | || ||||| || | ||||||||| Sbjct 9668 AGATTCAATGATAGCATACC--AGAGCTGCTGGGCCTTCACC 9629 Score = 102 bits (112), Expect = 6e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| |||||||| | Sbjct 8432 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCCTCTTT 8373 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 8372 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8314 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 8313 AGATGGCAAA 8304 >seq25901 Length=46880 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | || || ||||||||||| ||||| |||||| ||| |||||| Sbjct 7210 CAGGAGGTGCAGGTCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAT 7269 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||||||||||||||| | ||||| || || ||||||| Sbjct 7270 GTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 7312 >seq1807 Length=48173 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 47503 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 47444 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | || || || ||||||||| |||| || || || ||||| Sbjct 47443 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 47389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397308816848240