Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq11560 120 2e-22
seq25901 105 5e-18
seq1807 86.0 5e-12
>seq11560
Length=34702
Score = 120 bits (132), Expect = 2e-22
Identities = 126/162 (78%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| || || ||||| ||||| ||||| ||||| ||||| ||
Sbjct 9788 GGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 9729
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| ||
Sbjct 9728 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTG 9669
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|| |||||||| || | || ||||| || | |||||||||
Sbjct 9668 AGATTCAATGATAGCATACC--AGAGCTGCTGGGCCTTCACC 9629
Score = 102 bits (112), Expect = 6e-17
Identities = 102/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||| || || | ||||| |||||||| |
Sbjct 8432 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCCTCTTT 8373
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| ||||||||| |||||||
Sbjct 8372 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8314
Query 66459 AGATGGCGAA 66468
||||||| ||
Sbjct 8313 AGATGGCAAA 8304
>seq25901
Length=46880
Score = 105 bits (116), Expect = 5e-18
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | || || ||||||||||| ||||| |||||| ||| ||||||
Sbjct 7210 CAGGAGGTGCAGGTCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAT 7269
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||||||||||||||||| | ||||| || || |||||||
Sbjct 7270 GTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 7312
>seq1807
Length=48173
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||| | | || || ||||||||||| ||||||||||
Sbjct 47503 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 47444
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||||||||| || | || || || ||||||||| |||| || || || |||||
Sbjct 47443 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 47389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397308816848240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |