Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1566 120 2e-22
seq41089 89.7 4e-13
seq35559 87.8 1e-12
>seq1566
Length=12574
Score = 120 bits (132), Expect = 2e-22
Identities = 126/162 (78%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || ||||| ||||| ||||| ||||| ||||| |||| ||||| ||
Sbjct 2904 GGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTG 2963
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| |||||||| ||||| | |||||||| | |||||| || ||||||||||| ||
Sbjct 2964 GTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTG 3023
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
||||||||||| |||| || ||||| || | |||||||||
Sbjct 3024 CGACTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 3063
Score = 102 bits (112), Expect = 6e-17
Identities = 102/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||||||||| | ||||| |||||||| |
Sbjct 4831 CATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGCTCCTCCTT 4890
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || | ||| || |||||||||||||| |||||| || |||||||
Sbjct 4891 CCCAGTG-TTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGCTCCAGGT 4949
Query 66459 AGATGGCGAA 66468
| ||||||||
Sbjct 4950 AAATGGCGAA 4959
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/188 (73%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740
|||||| ||||| ||||||||| |||| |||||||| || || || || | |||||
Sbjct 417 TCGTACGGTCCCTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAGGGCACCATAGTAAATA 476
Query 65741 GTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798
|||||||| || | | || ||| | | ||||| |||||| | || |||| ||
Sbjct 477 GTCTCGAAGATCTGCTGGTTCAAGCGCTGG-GCCTCGGGACTCTCGAAGGGG-TACCTCA 534
Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858
|||||| |||| || ||||| || || || || || |||||||||||||| ||| |
Sbjct 535 TCAGGATGAAAGCATCCGCCAGGCCCTGCACGCCGATGCCGATGGGACGATGGCGCTTGT 594
Query 65859 TGGAACGT 65866
|||| |||
Sbjct 595 TGGAGCGT 602
>seq41089
Length=22409
Score = 89.7 bits (98), Expect = 4e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| || | || || ||||||||||| ||||| ||||
Sbjct 6455 TGGCACGTTTTAGTCAGGAGGTGCAGGTCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 6514
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||| || || || || || ||||||||||| | ||||| || || |||||||
Sbjct 6515 TTCTCATTGAAAACGTTCATTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 6571
>seq35559
Length=19442
Score = 87.8 bits (96), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|| || || ||||| | || || ||||||||||| |||||||||||||||||||| ||
Sbjct 783 CAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 842
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
| || || || ||||||||| |||| || || || |||||
Sbjct 843 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397266342422480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |