Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1566 120 2e-22 seq41089 89.7 4e-13 seq35559 87.8 1e-12 >seq1566 Length=12574 Score = 120 bits (132), Expect = 2e-22 Identities = 126/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 2904 GGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGGTCCCCAGGTTCTGCTG 2963 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| | |||||||| | |||||| || ||||||||||| || Sbjct 2964 GTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTGTGCCGGTCTCCGTCTG 3023 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||||||||| |||| || ||||| || | ||||||||| Sbjct 3024 CGACTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 3063 Score = 102 bits (112), Expect = 6e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||||||||| | ||||| |||||||| | Sbjct 4831 CATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGCTCCTCCTT 4890 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || | ||| || |||||||||||||| |||||| || ||||||| Sbjct 4891 CCCAGTG-TTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGCTCCAGGT 4949 Query 66459 AGATGGCGAA 66468 | |||||||| Sbjct 4950 AAATGGCGAA 4959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| ||||| ||||||||| |||| |||||||| || || || || | ||||| Sbjct 417 TCGTACGGTCCCTGCTCCTTGGCCAGTTCACAGCTGGCTTCCAGGGCACCATAGTAAATA 476 Query 65741 GTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 |||||||| || | | || ||| | | ||||| |||||| | || |||| || Sbjct 477 GTCTCGAAGATCTGCTGGTTCAAGCGCTGG-GCCTCGGGACTCTCGAAGGGG-TACCTCA 534 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 |||||| |||| || ||||| || || || || || |||||||||||||| ||| | Sbjct 535 TCAGGATGAAAGCATCCGCCAGGCCCTGCACGCCGATGCCGATGGGACGATGGCGCTTGT 594 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 595 TGGAGCGT 602 >seq41089 Length=22409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| || | || || ||||||||||| ||||| |||| Sbjct 6455 TGGCACGTTTTAGTCAGGAGGTGCAGGTCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 6514 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| || || || || || ||||||||||| | ||||| || || ||||||| Sbjct 6515 TTCTCATTGAAAACGTTCATTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 6571 >seq35559 Length=19442 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||||| | || || ||||||||||| |||||||||||||||||||| || Sbjct 783 CAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 842 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || || || ||||||||| |||| || || || ||||| Sbjct 843 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397266342422480