Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1702 172 1e-40 >seq1702 Length=36364 Score = 172 bits (190), Expect = 1e-40 Identities = 207/276 (75%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||| ||||||||||||| Sbjct 12522 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAGAAAATTAGAGTGT 12581 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| || | |||| ||| |||||||| ||||||||| | ||||| Sbjct 12582 TCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 12640 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | | || | |||||||| ||||| | |||||| | || Sbjct 12641 CTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 12700 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| ||||| ||| |||||||| || Sbjct 12701 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGCCTAGAGCGAAAGCATT 12760 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 12761 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 12795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915165652544