Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1702 114 2e-23 seq17 107 3e-21 >seq1702 Length=36364 Score = 114 bits (126), Expect = 2e-23 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 13122 CAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAA 13063 Query 243 GAGCTATCAATCTGTC 258 ||||| |||||||||| Sbjct 13062 GAGCTCTCAATCTGTC 13047 >seq17 Length=11215226 Score = 107 bits (118), Expect = 3e-21 Identities = 169/235 (72%), Gaps = 13/235 (6%) Strand=Plus/Minus Query 32 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT--TGGC 89 ||||||| | ||| | ||||||| | ||||||||||| || || ||| || | Sbjct 8393480 GCGGCCCCGGACACCCAAGGGCACCCCAGACCTGTTACCGC-TCTG---TCCGGGGTGTC 8393425 Query 90 TGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTCGATGGGG---CTAT 145 |||| |||| | |||||||||||||| | | |||| ||| | | | | | | || Sbjct 8393424 TGGACGCCACTTGTCCCTCTAAGAAGTCGGACACCGACCGCTCGGGGGTCGCGTAACTCG 8393365 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG--ACAAATCACTCCACCAAC 203 ||||| | | | |||||||||||||| |||||||| |||| || ||||| || | Sbjct 8393364 TTAGCGTGCCAGAGCCTCGTTCGTTATCGCAATTAACCGATAACAAGTCGCTCCATCATC 8393305 Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||| |||||||||||||| | || ||||| ||||| || | ||| |||||| Sbjct 8393304 TGAGAATGGCCATGCACCACC-CTCACGGAATCGAGAAAAAGATCTCATTCTGTC 8393251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796771030593