Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq73 288 2e-75 seq165 286 6e-75 seq169 241 2e-61 seq14 205 2e-50 seq3752 183 5e-44 seq3751 107 3e-21 seq232 102 1e-19 seq221 93.3 7e-17 >seq73 Length=26452829 Score = 288 bits (318), Expect = 2e-75 Identities = 186/204 (91%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 12365530 TCATCAGCAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 12365471 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 12365470 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTAACAATGATAGGAAGAGCCGA 12365411 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||||||||| || |||||||||| ||||| | |||||||||||||||||| Sbjct 12365410 CACTGAAGGATCAAAAAGCGACATCGCTATGAATGCTTGACCGCCACAAGCCAGTTATCC 12365351 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 |||| |||||||||||| |||||| Sbjct 12365350 CTGTAGTAACTTTTCTGACACCTC 12365327 >seq165 Length=40645462 Score = 286 bits (316), Expect = 6e-75 Identities = 221/263 (84%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||| Sbjct 30635499 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACAGCCTAAACCCAGCTCACATTCCCTA 30635440 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||| |||||||| |||||||||||| || ||||| |||| ||| Sbjct 30635439 TTAGTGGGTGAACAATGCAACGCTTGGTGAATTCTGCTTCACAATCATAGGTAGAGTCGA 30635380 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 30635379 CATCGAAGGATCAAAAAGCAACGTCGCTATGAATGCTTGGTCGCCACAAGCCAGTTGTCC 30635320 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || |||||||||||||| ||||| || | ||| | | | |||||||| ||| Sbjct 30635319 CTATGGTAACTTTTCTGACACCTGCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGG 30635260 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 30635259 CCCCGCTTTCACGGTCTGTATTC 30635237 >seq169 Length=5980525 Score = 241 bits (266), Expect = 2e-61 Identities = 159/176 (90%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| |||||||||||||||||||||| ||||||||||||| ||| | |||||| Sbjct 2769185 TCATCAGTAGAGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGTTCATGCTCCCTA 2769244 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 2769245 TTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 2769304 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| Sbjct 2769305 CATCGAAAGATCAAAAAGCGATGTCGCTATGAACACTTGGCTGCCACAAGCCAGTT 2769360 >seq14 Length=5276804 Score = 205 bits (226), Expect = 2e-50 Identities = 128/138 (93%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4950509 TCATCAGTAGGGTAAAGCTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 4950450 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| |||||||||| |||| | Sbjct 4950449 TTAGTGGGTGAACAATCCAACGCTTGGGGAATTCTGCTTCACAATGATAGGAAAAGCCAA 4950390 Query 151 CATCGAAGGATCAAAAAG 168 ||| |||||||||||||| Sbjct 4950389 CATTGAAGGATCAAAAAG 4950372 >seq3752 Length=30765690 Score = 183 bits (202), Expect = 5e-44 Identities = 130/149 (87%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 ||| ||| ||||||||||||||||| |||| |||||||||||| |||| ||||| | Sbjct 27536615 CCCAATTCGTGGGTGAACAATCCAAGGCTTGGTGAATTCTGCTTCACAATGACAGGAAAA 27536674 Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 ||| | || |||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27536675 GCCAAAATTGAAGGATCAAAAAGTGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGT 27536734 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| ||||||||||| Sbjct 27536735 TATCCCTGTGGTAACTCCTCTGGCACCTC 27536763 Score = 178 bits (196), Expect = 2e-42 Identities = 156/196 (80%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||| | ||||||| | | |||| ||||||||||||||| || | Sbjct 26754694 CATCAGTAGGGTAAAACTGATGTGTCTCACGTTGCTCTAGACCCAGCTCACGTTCTCTCT 26754753 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||| | || || ||||||||| ||||||| Sbjct 26754754 TAGTGGGTGAACAATCCAATGTTTGGTGAGTTCTGCTTCACACTGATAGG---------- 26754803 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| |||||||||| ||| || |||||||| ||||||||| ||||||||| |||||||| Sbjct 26754804 ATCAAAGGATCAAAGAGCGACATCGCTATGGACGCTTGGCCACCACAAGCCCGTTATCCC 26754863 Query 212 TGTGGTAACTTTTCTG 227 ||||| || ||||||| Sbjct 26754864 TGTGGAAAATTTTCTG 26754879 >seq3751 Length=15208774 Score = 107 bits (118), Expect = 3e-21 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||| Sbjct 11919370 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACAGCCTAAACCCAGCTCACATTCCCTA 11919311 Query 91 TTAGTGGGTGAA 102 |||||||||||| Sbjct 11919310 TTAGTGGGTGAA 11919299 >seq232 Length=3514978 Score = 102 bits (112), Expect = 1e-19 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||| |||| |||| || ||| || | |||||| ||||||||||| || | Sbjct 239698 TCATCAGAAGGGGAAAAGTAACTTGCCTCGTGGCAGTCTAAGCCCAGCTCACGGTCATTG 239639 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||||||| ||||| ||| |||||||| || | ||| ||||| | | || Sbjct 239638 TTAATGGGTGAACTGACCAACACTTGGTGAATTCTGTTTTGTGGTGACAGGAAAAACTGA 239579 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||| ||| || | ||| || |||| |||| || | || || Sbjct 239578 CATCGAAGG--GCTGAAGTAATTTTGCT---AATACTTGACTGCTGCAGGGTGTTTTTCT 239524 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||| |||||||||||| |||||| Sbjct 239523 CTGCAGTAACTTTTCTGACACCTC 239500 >seq221 Length=3261776 Score = 93.3 bits (102), Expect = 7e-17 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||| ||||||| ||||||||||| ||| ||||| |||||| ||||| || ||||| Sbjct 2169226 CATCAGTATGGTAAAAATAACCTGTCTCCTGATGGTCT-AACCCAACTCACATTTCCTAT 2169284 Query 92 TAGTGGGTGAACAATCCA 109 | |||| ||||||||||| Sbjct 2169285 TGGTGGATGAACAATCCA 2169302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854367934368