Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq718 167 8e-39 seq3746 107 6e-21 >seq718 Length=2191 Score = 167 bits (184), Expect = 8e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1372 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 1431 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| ||||||||| Sbjct 1432 GACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1471 >seq3746 Length=896794 Score = 107 bits (118), Expect = 6e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 |||||||||||||| |||||||| |||||| ||||||||||| ||| ||||||||| | Sbjct 667394 GCTGTGGTTTCGCTGGATAGTAGGTAGGGATAGTGGGAATCTTGTTCATCCATTCAGGTA 667453 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||| ||||||||| | |||| ||||||||| Sbjct 667454 TGTCAGTAATTAGATTATGAGGTATTTGGCTA 667485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635138630944