Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1702 452 1e-124 >seq1702 Length=36364 Score = 452 bits (500), Expect = 1e-124 Identities = 414/515 (80%), Gaps = 16/515 (3%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||| Sbjct 12325 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 12266 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12265 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 12206 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||| Sbjct 12205 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTAACCATGGTAGG 12146 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | | ||||||||||||||||||||||||| ||| ||||| | |||||| | | Sbjct 12145 CACAGACAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTCGCCGCCGCG 12086 Query 243 AGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GT 296 || | |||||| | | | ||||| || ||||||| | || | |||| || Sbjct 12085 GGGGCGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCTGCCGGGCGGGCCCGGGT 12026 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTATTA 353 ||| |||| ||| |||||| ||| | | || || ||||| | | | || ||||||| Sbjct 12025 TGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCTTGTATTA 11967 Query 354 GCTCTAGAATTACCACGGTTATCCATGTA----GTAAGGTACTATCAAATAAACGATAAC 409 |||||||||||||||| |||||||| ||| | ||| | | |||| ||| ||||| Sbjct 11966 GCTCTAGAATTACCACAGTTATCCAAGTAGCGGGAGAGGAGCGACCAAAGGAACCATAAC 11907 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 11906 TGATTTAATGAGCCATTCGCAGTTTCACTGTACCACCCGTGTGTACTTAGACATGCATGG 11847 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| |||||||||||||||||| |||||||||| Sbjct 11846 CTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 11813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510343314688