Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq230 111 1e-19 seq3752 107 2e-18 seq307 95.1 1e-14 >seq230 Length=477728 Score = 111 bits (122), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||| || Sbjct 342988 GGTGTACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 343047 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || ||||| | || ||||| | |||||| || ||||||||||| || Sbjct 343048 GTTGCTCTTTCGGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTG 343107 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| |||||||||| || ||||| || | ||||||||| Sbjct 343108 CGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 343147 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 345697 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGCTCCTCTTT 345756 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || | ||| || |||||||||||||| ||||| || ||||||| Sbjct 345757 CCCAGTG-TTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 345815 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 345816 AGATGGCAAA--AGCCC 345830 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| |||| ||| |||||||||| |||||||| || || || | |||||||| Sbjct 336445 TCGTACGGCCCCTGCTCTTTGGCAAGTTCACAGCTGGCTTCCAGAGCCCCGTAATAAATG 336504 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCAT 65799 ||||||||||| | | | | ||| | | ||||| ||||||| | || || ||| Sbjct 336505 GTCTCGAAAATCTGCTGGTTCAAGCGC-TGGGCCTCGGGGCTCTCGAAGGGGTAACGCAT 336563 Query 65800 CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 ||||| || | || ||||| || || || || || ||||||||||| || || Sbjct 336564 CAGGATGAAGGCATCTGCCAGGCCCTGCACCCCGATGCCGATGGGACGGTGGCG 336617 >seq3752 Length=30765690 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| ||||||| ||||||||||| | | || |||||||||||||| ||||| |||| Sbjct 11119430 TGGCACGTTTCAGTCAGGAGGTGCAGATCCCAGAAGCGCGTTGTTTCTATGGCTTTCAGA 11119371 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||||||||||||||| | ||||| || || ||||||| Sbjct 11119370 TTCTCATTGAGAACGTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 11119314 >seq307 Length=12913425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| || ||| | | || || ||||||||||| |||||||||| Sbjct 4485173 TGGAGCGGTTCAGTCAGGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 4485232 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||| ||| | || || || ||||||||| | || || || || ||||||| Sbjct 4485233 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTGCTTATTGACACCTACATCA 4485289 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 4483819 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 4483878 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||| ||||| Sbjct 4483879 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAAGAGGT 4483916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549815363920