Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq535 104 1e-16 seq1395 89.7 2e-12 >seq535 Length=101870 Score = 104 bits (114), Expect = 1e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||| | ||||| ||| ||||||||||||| ||| ||||| ||||||| Sbjct 77626 CTCCTTGAGGCGGGGGACGCCCAAGGTGACGTTCTTGGCCGAGACCCCGGCGTAGTGGAA 77685 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||| ||| ||| || || | | ||||| | || || || || Sbjct 77686 GGTGTTGAGGGTCATCTGGGTGGCGGGTTCTCCCAAGGACTGGGCGGCCAGAGCCCCCAC 77745 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 77746 CATCTCCCCGGG 77757 Score = 104 bits (114), Expect = 1e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||| | ||||| ||| ||||||||||||| ||| ||||| ||||||| Sbjct 78129 CTCCTTGAGGCGGGGGACGCCCAAGGTGACGTTCTTGGCCGAGACCCCGGCGTAGTGGAA 78188 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||| ||| ||| || || | | ||||| | || || || || Sbjct 78189 GGTGTTGAGGGTCATCTGGGTGGCGGGTTCTCCCAAGGACTGGGCGGCCAGAGCCCCCAC 78248 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 78249 CATCTCCCCGGG 78260 >seq1395 Length=6394 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 351147 GGTTGATGCCGATGGTGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACC 351206 |||||| || || |||| | | || || |||| |||||||| |||| |||||| Sbjct 4577 GGTTGAGGCGGAAGGTGGACCAGGGCAGGATGCGG---ACGCGGTGGCCCATCATGGACA 4633 Query 351207 CGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCT 351266 ||||| |||||||||||||| ||| ||||| ||||| ||||||| || ||| | || Sbjct 4634 TCTTGTGCAGCGTGGGCTGGCGGTTGAAGATGACAATGTCCCCATCGCACATGTGACGCT 4693 Query 351267 CCACCTTG 351274 |||||||| Sbjct 4694 CCACCTTG 4701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084636509655894