Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq435 156 6e-36 seq588 109 8e-22 >seq435 Length=768439 Score = 156 bits (172), Expect = 6e-36 Identities = 171/222 (77%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 13 GGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGAC 72 ||||| || ||||||||||||| ||||| |||||||||| |||||| ||||||| | | Sbjct 132402 GGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-CCTCGTTCACGGG 132345 Query 73 CAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGT 131 |||||||||||| | ||||||||||||| ||||| | |||||| |||| Sbjct 132344 GAACAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCTCGCCTGC 132285 Query 132 CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191 |||| ||| | | || | ||| ||||||||| |||||||| |||| | ||||| Sbjct 132284 CGGCGGAGGGTAGACACAAGCTGAGCCACTCAGTGTAGTGCGCGTGCAGCCCCGGACATC 132225 Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||||||||| ||||| || ||||| Sbjct 132224 TAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 132184 >seq588 Length=544423 Score = 109 bits (120), Expect = 8e-22 Identities = 108/136 (79%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 348323 GTACAAAGGGCAGGGACTAAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 348266 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | |||||||||||| | |||||||||||| ||| || | | || Sbjct 348265 CTCGTTCACGGGGAACAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 348206 Query 120 ACCCGGACCTGTCGGC 135 ||||| |||| |||| Sbjct 348205 ACCCGCGCCTGCCGGC 348190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751750109930