Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value SEQ23930 268 2e-69 >SEQ23930 Length=1308 Score = 268 bits (296), Expect = 2e-69 Identities = 309/413 (75%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 985 TACCTGCAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 926 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAA-GACAGGTG 121 |||||| |||||||||||||||||||| | || |||||||| ||| | | | Sbjct 925 GAGCGTTGTCCGGAATTACTGGGCGTAAAGAGCTCGTAGGCGGTT-TGTCGCGTCGTCCG 867 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||| | | | ||||||| | |||| | || | |||| |||| ||| Sbjct 866 TGAAAACTCGGAGCTTAACTCCGAGCTTGCGGGCGATACGGGCAGACTTGAGTACTACAG 807 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | ||||||||| ||||||| |||||||||| |||||| ||||||||||| || Sbjct 806 GGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTG 747 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| | | ||||| ||||||||| | | ||||||| |||| ||| |||| Sbjct 746 GCGAAGGCGGGTCTCTGGGTAGTAACTGACGCTGAGGAGCGAAAGCATGGGTAGCGAACA 687 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 ||||||||||||||||||||||| ||| |||||| | |||| ||| ||| || | Sbjct 686 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGGTGGGCGCTAGGTGTGGGGTCCTTCC 627 Query 362 -----TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| || |||||||||||| | ||| ||||||||||| ||| Sbjct 626 ACGGATTCC---GTGCCGTAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTAC 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289157641408