Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 197 2e-48 >SEQ25496 Length=1249 Score = 197 bits (218), Expect = 2e-48 Identities = 145/166 (87%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1085 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGACTTAC-GTCTTCGCAC 1143 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-C 119 |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| | Sbjct 1144 GGACCTGTGTTTTTAGTAAACAGTCGCTTCTCTCTGGTCTCTGCGACCACCCCCAGCTCC 1203 Query 120 AAC----ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTT 161 || | | ||||||| | |||| ||||||||||||||||| Sbjct 1204 CACCGCAAAGGTGTTCACCGGGCGTGGTCCCCCTTCTCCCGAAGTT 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694169250446