Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 96.9 3e-18 >SEQ25496 Length=1249 Score = 96.9 bits (106), Expect = 3e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| ||| ||||| | ||||||||||| ||||||||||| | ||| || ||| Sbjct 1191 GGTCGCAGAGACCAGAGAGAAGCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGACGT 1132 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| || ||||| || ||||||||||||||||| |||||||||| Sbjct 1131 AAGTCGATGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAA 1086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476641559062