Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value SEQ23930 484 2e-134 >SEQ23930 Length=1308 Score = 484 bits (536), Expect = 2e-134 Identities = 416/502 (83%), Gaps = 13/502 (3%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 579 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 520 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 |||| ||||||||| |||||||||||||||||||| | |||||||| | | || | Sbjct 519 GTGGATTAATTCGATGCAACGCGAAGAACCTTACCTAGGCTTGACATATACAGGACGGCG 460 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 |||||| | ||||||| | | || | | ||||||| |||||||||||||||| Sbjct 459 GCAGAGAT-GTCGTTTCCCTT---GTGGCTTGTAT-ACAGGTGGTGCATGGTTGTCGTCA 405 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA-GTT 238 ||||||||||||||||||||||||||||||||||||||||||||||| | || | ||| Sbjct 404 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGT-CTCATGTT 346 Query 239 GCCATCA--TTAAGTTGGGCACTC-TAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 |||| || ||| | |||| |||| | || ||||||||| | ||| |||||||||||| Sbjct 345 GCCAGCACGTTATGGTGGGGACTCGTGAGA-GACTGCCGGGGTCAACTCGGAGGAAGGTG 287 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| |||||||||||||||||||||||||| | ||||| ||||| ||||||||||| Sbjct 286 GGGATGACGTCAAATCATCATGCCCCTTATGTCTAGGGCTTCACACATGCTACAATGGCT 227 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 | |||| ||||| |||| |||| ||||| ||| |||||| ||||| || |||||||||| Sbjct 226 AGTACAGAGGGCTGCGATACCGTGAGGTGGAGCGAATCCCTTAAAGCTGGTCTCAGTTCG 167 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 ||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||| | Sbjct 166 GATTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAA 107 Query 475 TGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||| Sbjct 106 CGCTGCGGTGAATACGTTCCCG 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503484097920