Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq435 239 7e-61 seq89 107 3e-21 >seq435 Length=768439 Score = 239 bits (264), Expect = 7e-61 Identities = 204/247 (83%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 132255 TCAGTGTAGTGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 132197 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 132196 AATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGGG 132138 Query 135 GATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | | ||| |||||| | | |||||||||||||||||||||||||||| |||| Sbjct 132137 GGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAGAAAT 132078 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 132077 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 132018 Query 252 ATCTGTC 258 ||||||| Sbjct 132017 ATCTGTC 132011 >seq89 Length=2052582 Score = 107 bits (118), Expect = 3e-21 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 ||||| || |||||| |||| ||||||||||||||||||||| ||||||||||| |||| Sbjct 387308 TTATCAGAGTTAACCGGACAGATCACTCCACCAACTAAGAACAACCATGCACCACTACCC 387249 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||||| ||| |||| ||| ||||| Sbjct 387248 ACAGAATCAAAAAAAAGCTCTCAGTCTGT 387220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796535222862