Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 206 5e-51 >SEQ25496 Length=1249 Score = 206 bits (228), Expect = 5e-51 Identities = 235/312 (75%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| | |||| || ||||| |||| || | | |||||||| ||||||| Sbjct 797 ACGCCAGTGTGTGTGGAGTCGTTGTTGAAATACCACTCTGATCGTATTGGACGTCTAACC 738 Query 90 GGACGACGTATAACC--GTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 || | || | | | | | ||||||||| | | ||| ||||| ||||||||||| Sbjct 737 T--CGGCCCATGATCTGGGTTA-GGGACAGTGCCTGGTGGGTAGTTTAACTGGGGCGGTT 681 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||||||||||||||||||||||||||||| | |||||||| ||||||| || || | | Sbjct 680 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGATGGCAATCAGGTG 621 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 ||||||| ||| ||||| | ||||||| || || || ||| ||||||||||||| Sbjct 620 TTGAGTGCAAGTGCACAAGGGAGCTTGACTGTGAGACTGACACGTCGAGCAGGGACGAAA 561 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 |||||| || ||||||||| | ||||| | ||||||| ||||||||||| | Sbjct 560 GTCGGGACTAGTGATCCGGCACCGGCATGTGGAAGCGGTGTCGCTCAACGGATAAAAGGT 501 Query 328 ACCCTGGGGATA 339 |||| ||||||| Sbjct 500 ACCCCGGGGATA 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982063017152