Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value SEQ23930 224 2e-56 >SEQ23930 Length=1308 Score = 224 bits (248), Expect = 2e-56 Identities = 176/208 (85%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||||||||||| || | | | |||||||| | | ||| |||||||||||||||| Sbjct 1019 TTTACAATCCGAAGACCGTCATCCCC-CACGCGGCGTCG-CTGCATCAGGCTTTCGCCCA 1076 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1077 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1136 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | ||||| |||||||| || | ||| ||||||||||||| ||||||||| ||| Sbjct 1137 GTGGCCGATCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCAC 1196 Query 182 CAACTAGCTAATCCGACCTAGGCTCATC 209 |||| |||| || | | |||||||| Sbjct 1197 CAACAAGCTGATAGGCCGCGGGCTCATC 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071632282560