Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 322 7e-86 >SEQ25496 Length=1249 Score = 322 bits (356), Expect = 7e-86 Identities = 232/268 (87%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||||||| ||| ||||| ||||| |||| Sbjct 171 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCTAACCAGCGATGC 230 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | ||| | |||||||| ||||||||||| |||| ||||||||||||||||||| ||| Sbjct 231 TCCTGGTGGAACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAGGGA 290 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 |||| | ||| |||| ||||| | || ||||||| |||||||||||||| ||||||| Sbjct 291 CAGCCTTCCGCAAGTTTCTTACGCGCGCGGCGGATAGAGACCGAACTGTCTCACGACGTT 350 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 351 CTAAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCC 410 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 411 AGCCCCAGGATGCGACGAGCCGACATCG 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780540539672